WormBase Tree Display for Sequence: C05D9
expand all nodes | collapse all nodes | view schema
C05D9 | DNA | C05D9 | 34884 | |||
---|---|---|---|---|---|---|
SMap | S_child | Gene_child | WBGene00015471 | 24597 | 27289 | |
WBGene00015473 | 7040 | 9142 | ||||
WBGene00015476 | 23228 | 21403 | ||||
WBGene00015472 | 10885 | 15837 | ||||
WBGene00002062 | 3194 | 5233 | ||||
WBGene00219800 | 6061 | 6189 | ||||
WBGene00015474 | 18387 | 16181 | ||||
WBGene00004927 | 27968 | 31693 | ||||
WBGene00199484 | 9865 | 9941 | ||||
WBGene00196246 | 9941 | 9865 | ||||
CDS_child (292) | ||||||
Transcript (14) | ||||||
Nongenomic | yk149h11 | 24779 | 27183 | |||
yk303b6 | 21470 | 23206 | ||||
PCR_product (24) | ||||||
Allele (438) | ||||||
Oligo_set | Aff_C05D9.1 | 29610 | 31393 | |||
Aff_C05D9.2 | 25919 | 27202 | ||||
Aff_C05D9.3 | 13395 | 15442 | ||||
Aff_C05D9.4 | 7049 | 7398 | ||||
Aff_C05D9.5 | 3235 | 5024 | ||||
Aff_C05D9.7 | 18184 | 16329 | ||||
Aff_C05D9.8 | 33233 | 32089 | ||||
Aff_C05D9.6 | 788 | 2164 | ||||
Feature_object (310) | ||||||
Feature_data | C05D9:Polysome | 1 | 34884 | |||
C05D9:TranscriptionallyActiveRegion | 1 | 34884 | ||||
C05D9:ChIPSeqTF | 1 | 34884 | ||||
C05D9:TRF | 1 | 34884 | ||||
C05D9:Dust | 1 | 34884 | ||||
C05D9:inverted | 1 | 34884 | ||||
Homol_data (20) | ||||||
Structure | From | Source | CHROMOSOME_X | |||
Overlap_right | R193 | 32635 | ||||
Overlap_left | F49E7 | |||||
Clone_left_end | C05D9 | 1 | ||||
R193 | 33152 | |||||
Clone_right_end | F49E7 | 18494 | ||||
DB_info | Database | EMBL | NDB_AC | FO080359 | ||
NDB_ID | _U64605 | |||||
NDB_SV | FO080359.2 | |||||
Secondary_accession | U64605 | |||||
DB_remark | The 5' clone is F49E7, 2300 bp overlap; the 3' clone is R193, 2250 bp overlap. Actual start of this clone is at base position 1 of C05D9; actual end is at 11141 of R193. | |||||
[121025] Sequence correction: SNP 0 bases @ 32508 | ||||||
[121025] Sequence correction: SNP 0 bases @ 32540 | ||||||
Keyword | HTG | |||||
EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
Origin | From_author | Fulton L | ||||
Gattung S | ||||||
From_laboratory | RW | |||||
Date | 22 May 1996 00:00:00 | |||||
Date_directory | 960520 | |||||
Species | Caenorhabditis elegans | |||||
Visible | Clone | C05D9 | ||||
Properties | Genomic_canonical | |||||
Checksum | MD5 | bb979be2dc9703ef184217fc148b3d35 | ||||
Status | Shotgun | |||||
Finished | ||||||
Submitted | 22 May 1996 00:00:00 | |||||
Map | Sequence-X | |||||
Interpolated_map_position | X | -18.5426 | ||||
Method | Genomic_canonical |