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WormBase Tree Display for Gene: WBGene00004980

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Name Class

WBGene00004980SMapS_parentSequenceB0464
IdentityVersion1
NameCGC_namespk-1Person_evidenceWBPerson1315
Sequence_nameB0464.5
Molecular_name (13)
Other_namesrk-1
rsk-1Paper_evidenceWBPaper00003988
CELE_B0464.5Accession_evidenceNDBBX284603
Public_namespk-1
DB_infoDatabase (14)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:37WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classspk
Allele (80)
StrainWBStrain00035941
RNASeq_FPKM (74)
GO_annotation (25)
Ortholog (51)
ParalogWBGene00001121Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00002178Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00002187Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00002188Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003048Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003401Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003402Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004055Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004056Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004057Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004859Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015478Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00019665Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013091Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008200Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013705Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00007977Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017672Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013701Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017277Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00009921Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionspk-1 encodes a serine/threonine kinase orthologous to the highly conserved serine/arginine-rich protein kinases (SRPKs) that phosphorylate SR proteins, essential components of the pre-mRNA splicing machinery; SPK-1, required for embryogenesis and germline development, can directly bind and phosphorylate RSP-3 (CeSF2/ASF), an SR splicing factor homolog; SPK-1 is expressed predominantly in the adult germline; SPK-1 is homologous to human RSK2, which when mutated leads to Coffin-Lowry syndrome (OMIM:303600).Paper_evidenceWBPaper00004103
WBPaper00004476
Curator_confirmedWBPerson1843
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnables protein serine/threonine kinase activity. Involved in embryo development. Predicted to be located in cytoplasm and nucleus. Expressed in several structures, including gonad and tail. Is an ortholog of human SRPK1 (SRSF protein kinase 1); SRPK2 (SRSF protein kinase 2); and SRPK3 (SRSF protein kinase 3).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSB0464.5a
B0464.5b
B0464.5c
B0464.5d
Corresponding_CDS_historyB0464.5a:wp123
B0464.5c:wp119
Corresponding_transcriptB0464.5a.1
B0464.5a.2
B0464.5b.1
B0464.5c.1
B0464.5d.1
Other_sequence (83)
Associated_feature (20)
Experimental_infoRNAi_result (17)
Expr_patternChronogram621
Expr439
Expr1128
Expr5076
Expr1028333
Expr1032478
Expr1143250
Expr2016060
Expr2034296
Drives_constructWBCnstr00004059
WBCnstr00035294
Construct_productWBCnstr00035294
Microarray_results (50)
Expression_cluster (119)
InteractionWBInteraction000009753
WBInteraction000028477
WBInteraction000028478
WBInteraction000028724
WBInteraction000028972
WBInteraction000029291
WBInteraction000029427
WBInteraction000029649
WBInteraction000030106
WBInteraction000038013
WBInteraction000042484
WBInteraction000050417
WBInteraction000050531
WBInteraction000110665
WBInteraction000111986
WBInteraction000112335
WBInteraction000112979
WBInteraction000114274
WBInteraction000114332
WBInteraction000114591
WBInteraction000115546
WBInteraction000118569
WBInteraction000149067
WBInteraction000161155
WBInteraction000164204
WBInteraction000165243
WBInteraction000167561
WBInteraction000168626
WBInteraction000169720
WBInteraction000173815
WBInteraction000173816
WBInteraction000173817
WBInteraction000173818
WBInteraction000173819
WBInteraction000173820
WBInteraction000173821
WBInteraction000173822
WBInteraction000173823
WBInteraction000173824
WBInteraction000173825
WBInteraction000173826
WBInteraction000173827
WBInteraction000173828
WBInteraction000173829
WBInteraction000173830
WBInteraction000174079
WBInteraction000174080
WBInteraction000185356
WBInteraction000186165
WBInteraction000191624
WBInteraction000201770
WBInteraction000204176
WBInteraction000216324
WBInteraction000220698
WBInteraction000222255
WBInteraction000224094
WBInteraction000232452
WBInteraction000233449
WBInteraction000236640
WBInteraction000238134
WBInteraction000300181
WBInteraction000304967
WBInteraction000305026
WBInteraction000306881
WBInteraction000308604
WBInteraction000309334
WBInteraction000313145
WBInteraction000321609
WBInteraction000324917
WBInteraction000329477
WBInteraction000339408
WBInteraction000344532
WBInteraction000347510
WBInteraction000348045
WBInteraction000352816
WBInteraction000356320
WBInteraction000356365
WBInteraction000364307
WBInteraction000365684
WBInteraction000370684
WBInteraction000383121
WBInteraction000384344
WBInteraction000387021
WBInteraction000392193
WBInteraction000416647
WBInteraction000418602
WBInteraction000426264
WBInteraction000436661
WBInteraction000445675
WBInteraction000450222
WBInteraction000450483
WBInteraction000452704
WBInteraction000463067
WBInteraction000463370
WBInteraction000463371
WBInteraction000463372
WBInteraction000463373
WBInteraction000470017
WBInteraction000508355
WBInteraction000522842
WBInteraction000522887
WBInteraction000522937
WBInteraction000522942
WBInteraction000522995
WBInteraction000523046
WBInteraction000523068
WBInteraction000523120
WBInteraction000523272
WBInteraction000523301
WBInteraction000523339
WBInteraction000523343
WBInteraction000523513
WBInteraction000523568
WBInteraction000523579
WBInteraction000523588
WBInteraction000523598
WBInteraction000524429
WBInteraction000543629
WBInteraction000543747
WBInteraction000543777
WBInteraction000543801
WBInteraction000543825
WBInteraction000543874
WBInteraction000543888
WBInteraction000543921
WBInteraction000543959
WBInteraction000544004
WBInteraction000549796
WBInteraction000570152
WBInteraction000571619
WBInteraction000583128
WBProcessWBbiopr:00000014
Map_infoMapIIIPosition0.536942Error0.008194
PositivePositive_clone (2)
Mapping_dataMulti_point5000
Pseudo_map_position
Reference (19)
RemarkThe srk-1 gene was merged into this gene following advice by Jonathan Hodgkin. srk-1 was connected to different sequences which may have been in error and these sequence connections have been removed from the merged gene. krb 27/02/02
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene