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WormBase Tree Display for Gene: WBGene00002253

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Name Class

WBGene00002253SMapS_parentSequenceF40F4
IdentityVersion1
NameCGC_namelbp-1Person_evidenceWBPerson492
Sequence_nameF40F4.3
Molecular_nameF40F4.3
F40F4.3.1
CE04533
Other_nameCELE_F40F4.3Accession_evidenceNDBBX284606
Public_namelbp-1
DB_infoDatabaseAceViewgeneXD879
WormQTLgeneWBGene00002253
WormFluxgeneWBGene00002253
NDBlocus_tagCELE_F40F4.3
PanthergeneCAEEL|WormBase=WBGene00002253|UniProtKB=Q20223
familyPTHR22725
NCBIgene180616
RefSeqproteinNM_076156.8
SwissProtUniProtAccQ20223
UniProt_GCRPUniProtAccQ20223
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:27WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlbp
Allele (9)
StrainWBStrain00037446
RNASeq_FPKM (74)
GO_annotation00067527
00067528
00067529
00110318
Ortholog (44)
ParalogWBGene00002259Caenorhabditis elegansFrom_analysisTreeFam
WBGene00002257Caenorhabditis elegansFrom_analysisTreeFam
WBGene00002260Caenorhabditis elegansFrom_analysisTreeFam
WBGene00021486Caenorhabditis elegansFrom_analysisTreeFam
WBGene00002254Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00002256Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00002255Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionlbp-1 encodes a predicted secreted fatty acid binding protein (FABP) that is similar to the Ascaris suum secreted FABP As-p18; by homology, LBP-1 is predicted to function in sequestering or transporting small hydrophobic molecules such as lipids and steroid hormones; an lbp-1::gfp promoter fusion is expressed in the embryo, beginning at gastrulation, in presumptive hypodermal precursors; lbp-1::gfp hypodermal expression continues in hyp7 nuclei through hatching and is then seen only in one ventral cord neuron from the L1 to adult stages; an LBP-1::GFP fusion construct that contains the predicted LBP-1 secretory signal is secreted into the perivitelline fluid prior to hatching.Paper_evidenceWBPaper00003911
Curator_confirmedWBPerson1843
Date_last_updated16 Jan 2008 00:00:00
Automated_descriptionPredicted to enable lipid binding activity. Predicted to be located in extracellular region.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF40F4.3
Corresponding_transcriptF40F4.3.1
Other_sequenceGW408050.1
EX911950.1
CJC04944_1
FC815663.1
EX012395.1
EX916138.1
HBC13338_1
Acan_isotig13823
Hbac_isotig05256
Tcol_isotig12614
SRC07920_1
FG972883.1
ES410970.1
GW408206.1
ACC13627_1
EX560696.1
EX009447.1
HBC00405_1
SRC10128_1
FD516335.1
FC550461.1
Name_isotig00468
FD515039.1
ES410325.1
ES740644.1
AAC00631_1
HGC00113_1
Oden_isotig00697
FD514684.1
CJC01192_1
EY460165.1
CRC05163_1
CRC01771_1
HGC00113_2
EX911596.1
FD514373.1
ES743102.1
Dviv_isotig07787
BUC01137_1
AYC01690_1
EX915388.1
EX915774.1
FC553118.1
ES410524.1
EX915833.1
Dviv_isotig07783
FM207676.1
ES409956.1
CBC02337_1
EX009943.1
SC00336
Name_isotig00467
Dviv_isotig07788
DN190796.1
GR978168.1
SR00858
HG02677
CR04961
EX911807.1
FD514031.1
CR00487
CSC00474_1
BXC01011_1
HG03342
FC816861.1
DW718207.1
FC815835.1
AE00786
GW406824.1
FG972048.1
Dviv_isotig07785
SRC01635_1
EX012044.1
Associated_feature (12)
Experimental_infoRNAi_resultWBRNAi00102642Inferred_automaticallyRNAi_primary
WBRNAi00014657Inferred_automaticallyRNAi_primary
WBRNAi00046865Inferred_automaticallyRNAi_primary
WBRNAi00088954Inferred_automaticallyRNAi_primary
WBRNAi00032032Inferred_automaticallyRNAi_primary
Expr_patternExpr6010
Expr1031327
Expr1150732
Expr2013018
Expr2031250
Drives_constructWBCnstr00003451
WBCnstr00008651
WBCnstr00020895
WBCnstr00020905
WBCnstr00020919
WBCnstr00020920
WBCnstr00020921
WBCnstr00020929
WBCnstr00021437
WBCnstr00036358
Construct_productWBCnstr00036358
Microarray_results (13)
Expression_cluster (260)
InteractionWBInteraction000030987
WBInteraction000030988
WBInteraction000135555
WBInteraction000135556
WBInteraction000191494
WBInteraction000197000
WBInteraction000204692
WBInteraction000226453
WBInteraction000230600
WBInteraction000242638
WBInteraction000249259
WBInteraction000303932
WBInteraction000307430
WBInteraction000308348
WBInteraction000321972
WBInteraction000344096
WBInteraction000353214
WBInteraction000363135
WBInteraction000375780
WBInteraction000378310
WBInteraction000386759
WBInteraction000389623
WBInteraction000389794
WBInteraction000398335
WBInteraction000404892
WBInteraction000412911
WBInteraction000419709
WBInteraction000424209
WBInteraction000429590
WBInteraction000432710
WBInteraction000434642
WBInteraction000515506
WBInteraction000548030
WBInteraction000552037
WBInteraction000577624
WBInteraction000580118
Map_infoMapXPosition-10.6531
PositivePositive_cloneF40F4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (16)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene