WormBase Tree Display for Gene: WBGene00002220
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WBGene00002220 | SMap | S_parent | Sequence | C15C7 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | gcc-1 | Paper_evidence | WBPaper00046586 | |||||
Person_evidence | WBPerson298 | ||||||||
Sequence_name | C15C7.2 | ||||||||
Molecular_name | C15C7.2 | ||||||||
C15C7.2.1 | |||||||||
CE38486 | |||||||||
Other_name | klp-8 | Person_evidence | WBPerson589 | ||||||
CELE_C15C7.2 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | gcc-1 | ||||||||
DB_info | Database | AceView | gene | XD781 | |||||
WormQTL | gene | WBGene00002220 | |||||||
WormFlux | gene | WBGene00002220 | |||||||
NDB | locus_tag | CELE_C15C7.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00002220|UniProtKB=Q18013 | |||||||
family | PTHR23157 | ||||||||
NCBI | gene | 180606 | |||||||
RefSeq | protein | NM_076142.8 | |||||||
TREEFAM | TREEFAM_ID | TF318590 | |||||||
TrEMBL | UniProtAcc | Q18013 | |||||||
UniProt_GCRP | UniProtAcc | Q18013 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:27 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 25 Mar 2015 16:36:59 | WBPerson2970 | Name_change | CGC_name | gcc-1 | ||||
Other_name | klp-8 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | gcc | ||||||||
Allele (70) | |||||||||
Legacy_information | [Siddiqui SS ] related to kinesin like protein by sequence similarity. | ||||||||
Strain | WBStrain00002621 | ||||||||
WBStrain00032635 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00056978 | ||||||||
00056979 | |||||||||
00056980 | |||||||||
Contained_in_operon | CEOPX040 | ||||||||
Ortholog (23) | |||||||||
Paralog | WBGene00011503 | Caenorhabditis elegans | From_analysis | Panther | |||||
Structured_description | Concise_description | gcc-1 encodes a coiled-coil protein with a C-terminal Golgi-targeting GRIP domain that is the C. elegans ortholog of the human golgin, GCC1; by sequence similarity, GCC-1 is predicted to function in retrograde transport from early endosomes to the trans-Golgi network; large-scale promoter expression studies report that gcc-1 is expressed in multiple tissues including, but not limited to, the pharynx, neurons, hypodermis, and excretory cell. | Paper_evidence | WBPaper00046586 | |||||
WBPaper00030963 | |||||||||
WBPaper00006525 | |||||||||
WBPaper00031006 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson324 | |||||||||
Date_last_updated | 21 Apr 2015 00:00:00 | ||||||||
Automated_description | Predicted to be located in Golgi apparatus. Expressed in several structures, including head. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C15C7.2 | |||||||
Corresponding_CDS_history | C15C7.2:wp142 | ||||||||
Corresponding_transcript | C15C7.2.1 | ||||||||
Other_sequence | Tcir_isotig22567 | ||||||||
CBC16867_1 | |||||||||
Tcir_isotig17360 | |||||||||
Associated_feature (9) | |||||||||
Experimental_info | RNAi_result (2) | ||||||||
Expr_pattern | Chronogram1422 | ||||||||
Expr4831 | |||||||||
Expr5269 | |||||||||
Expr15134 | |||||||||
Expr1012456 | |||||||||
Expr1031299 | |||||||||
Expr1144650 | |||||||||
Expr2011960 | |||||||||
Expr2030197 | |||||||||
Drives_construct | WBCnstr00002705 | ||||||||
WBCnstr00004401 | |||||||||
WBCnstr00012262 | |||||||||
WBCnstr00037959 | |||||||||
Construct_product | WBCnstr00037959 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (97) | |||||||||
Interaction | WBInteraction000030969 | ||||||||
WBInteraction000216603 | |||||||||
WBInteraction000320396 | |||||||||
WBInteraction000362652 | |||||||||
WBInteraction000512401 | |||||||||
WBInteraction000543034 | |||||||||
Map_info (3) | |||||||||
Reference | WBPaper00010295 | ||||||||
WBPaper00018069 | |||||||||
WBPaper00018596 | |||||||||
WBPaper00019563 | |||||||||
WBPaper00030963 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00046586 | |||||||||
Remark | Sequence connection from [Siddiqui SS], 02/06/11 krb. | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
C15C7.2, based on sequence similarity and subcellular localization is a GRIP domain containing Trans-Golgi Network protein of the Golgin family, not a kinesin; thus klp-8 is not an appropriate name | Paper_evidence | WBPaper00046586 | |||||||
Method | Gene |