WormBase Tree Display for Gene: WBGene00006785
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WBGene00006785 | SMap | S_parent | Sequence | T07A5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | unc-50 | Person_evidence | WBPerson261 | |||||
Sequence_name | T07A5.2 | ||||||||
Molecular_name | T07A5.2 | ||||||||
T07A5.2.1 | |||||||||
CE36501 | |||||||||
Other_name | CELE_T07A5.2 | Accession_evidence | NDB | BX284603 | |||||
Public_name | unc-50 | ||||||||
DB_info | Database | AceView | gene | 3L404 | |||||
WormQTL | gene | WBGene00006785 | |||||||
WormFlux | gene | WBGene00006785 | |||||||
NDB | locus_tag | CELE_T07A5.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006785|UniProtKB=Q10045 | |||||||
family | PTHR12841 | ||||||||
NCBI | gene | 176443 | |||||||
RefSeq | protein | NM_066878.5 | |||||||
SwissProt | UniProtAcc | Q10045 | |||||||
TREEFAM | TREEFAM_ID | TF105624 | |||||||
UniProt_GCRP | UniProtAcc | Q10045 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:42 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 01 Oct 2007 12:05:44 | WBPerson2970 | Event | Acquires_merge | WBGene00011555 | ||||
Acquires_merge | WBGene00011555 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | unc | ||||||||
Reference_allele | WBVar00143101 | ||||||||
Allele (57) | |||||||||
Legacy_information | e306 : weak kinker slow but fairly active resistant to 1 mM levamisole sensitive to hypoosmotic shock. ES3 ME1. NA7 (e425 etc. : all similar to e306). | ||||||||
[C.elegansII] e306 : weak kinker, slow but fairly active; resistant to 1 mM levamisole sensitive to hypoosmotic shock. Extracts lack levamisole binding. ES3 ME1. OA6: e425 etc. (all similar). Cloned: encodes predicted 301 aa novel protein, possible TM domain. [Lewis et al. 1980; MT; WS; ZZ] | |||||||||
Strain | WBStrain00027163 | ||||||||
WBStrain00027198 | |||||||||
WBStrain00027199 | |||||||||
WBStrain00032235 | |||||||||
WBStrain00004144 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00056029 | ||||||||
00056030 | |||||||||
00056031 | |||||||||
00056032 | |||||||||
00056033 | |||||||||
00056034 | |||||||||
00056035 | |||||||||
00056036 | |||||||||
Contained_in_operon | CEOP3832 | ||||||||
Ortholog (35) | |||||||||
Structured_description | Concise_description | unc-50 encodes an integral membrane protein orthologous to the Saccharomyces cerevisiae Golgi component Gmh1p; UNC-50 is required for regulating subtype-specific ionotropic acetylcholine receptor trafficking to the cell surface and thus, for normal synaptic transmission at the neuromuscular junction; UNC-50 is ubiquitously expressed from early embryogenesis to adulthood and localizes to the Golgi. | Paper_evidence | WBPaper00031010 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 29 Jul 2015 00:00:00 | ||||||||
Automated_description | Involved in receptor localization to synapse and regulation of muscle contraction. Located in Golgi membrane. Expressed in several structures, including alimentary muscle; gonad; intestine; neurons; and vulval muscle. Is an ortholog of human UNC50 (unc-50 inner nuclear membrane RNA binding protein). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T07A5.2 | |||||||
Corresponding_transcript | T07A5.2.1 | ||||||||
Other_sequence | HG01471 | ||||||||
DN152853.1 | |||||||||
ACC39928_1 | |||||||||
MCC00757_1 | |||||||||
Tcol_isotig13677 | |||||||||
JI211064.1 | |||||||||
AS12038 | |||||||||
Dviv_isotig13779 | |||||||||
ASC11556_1 | |||||||||
Hbac_isotig04081 | |||||||||
HG05147 | |||||||||
LSC01606_1 | |||||||||
CBC05290_1 | |||||||||
ES561464.1 | |||||||||
CR12389 | |||||||||
AS11525 | |||||||||
HGC02417_1 | |||||||||
Dviv_isotig13782 | |||||||||
MC01813 | |||||||||
HGC12209_1 | |||||||||
ASC03440_1 | |||||||||
PPC07763_1 | |||||||||
ACC00994_1 | |||||||||
EX560400.1 | |||||||||
TSC10828_1 | |||||||||
Dviv_isotig13781 | |||||||||
HQ116822.1 | |||||||||
CD203435.1 | |||||||||
ES570451.1 | |||||||||
Tcir_isotig06429 | |||||||||
XI04519 | |||||||||
RSC04144_1 | |||||||||
EX552533.1 | |||||||||
HBC28200_1 | |||||||||
Acan_isotig09116 | |||||||||
FG619621.1 | |||||||||
CR01169 | |||||||||
HG05304 | |||||||||
TSC10380_1 | |||||||||
Dviv_isotig13780 | |||||||||
XIC05042_1 | |||||||||
HG05305 | |||||||||
JI170874.1 | |||||||||
CJC04265_1 | |||||||||
CRC01927_1 | |||||||||
HGC04896_1 | |||||||||
BM517665.1 | |||||||||
HG09146 | |||||||||
FG348790.1 | |||||||||
EX562048.1 | |||||||||
RS09206 | |||||||||
Associated_feature | WBsf227435 | ||||||||
WBsf227436 | |||||||||
Experimental_info | RNAi_result (13) | ||||||||
Expr_pattern | Expr4027 | ||||||||
Expr4910 | |||||||||
Expr4911 | |||||||||
Expr1012237 | |||||||||
Expr1032856 | |||||||||
Expr1156300 | |||||||||
Expr2017883 | |||||||||
Expr2036019 | |||||||||
Drives_construct | WBCnstr00012326 | ||||||||
WBCnstr00034152 | |||||||||
Construct_product | WBCnstr00012325 | ||||||||
WBCnstr00034152 | |||||||||
Microarray_results (23) | |||||||||
Expression_cluster (106) | |||||||||
Interaction (17) | |||||||||
Map_info | Map | III | Position | 2.30916 | Error | 0.004481 | |||
Well_ordered | |||||||||
Positive | Inside_rearr | nDp2 | |||||||
Positive_clone | T07A5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
Mapping_data | 2_point | 56 | |||||||
75 | |||||||||
Multi_point (27) | |||||||||
Pos_neg_data | 650 | ||||||||
1619 | |||||||||
2722 | |||||||||
3243 | |||||||||
5726 | |||||||||
5734 | |||||||||
804 | |||||||||
1629 | |||||||||
Landmark_gene | |||||||||
Reference | WBPaper00000031 | ||||||||
WBPaper00000464 | |||||||||
WBPaper00000484 | |||||||||
WBPaper00000608 | |||||||||
WBPaper00000622 | |||||||||
WBPaper00000998 | |||||||||
WBPaper00001296 | |||||||||
WBPaper00001722 | |||||||||
WBPaper00002297 | |||||||||
WBPaper00002641 | |||||||||
WBPaper00002749 | |||||||||
WBPaper00003024 | |||||||||
WBPaper00003483 | |||||||||
WBPaper00004257 | |||||||||
WBPaper00005594 | |||||||||
WBPaper00006324 | |||||||||
WBPaper00013670 | |||||||||
WBPaper00013819 | |||||||||
WBPaper00014546 | |||||||||
WBPaper00014575 | |||||||||
WBPaper00014635 | |||||||||
WBPaper00014951 | |||||||||
WBPaper00015597 | |||||||||
WBPaper00016388 | |||||||||
WBPaper00017191 | |||||||||
WBPaper00020757 | |||||||||
WBPaper00021111 | |||||||||
WBPaper00022041 | |||||||||
WBPaper00022393 | |||||||||
WBPaper00023111 | |||||||||
WBPaper00023950 | |||||||||
WBPaper00025716 | |||||||||
WBPaper00025872 | |||||||||
WBPaper00026252 | |||||||||
WBPaper00027505 | |||||||||
WBPaper00028984 | |||||||||
WBPaper00029012 | |||||||||
WBPaper00030362 | |||||||||
WBPaper00030616 | |||||||||
WBPaper00031010 | |||||||||
WBPaper00032366 | |||||||||
WBPaper00032681 | |||||||||
WBPaper00032686 | |||||||||
WBPaper00032849 | |||||||||
WBPaper00035074 | |||||||||
WBPaper00035548 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00042470 | |||||||||
WBPaper00050097 | |||||||||
WBPaper00053187 | |||||||||
WBPaper00053262 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00064302 | |||||||||
WBPaper00065144 | |||||||||
Remark | on same cosmid as unc-69; genetic map data indicate unc-69 left of unc-50 JAH 01/01 | ||||||||
Method | Gene |