WormBase Tree Display for Variation: WBVar00143101
expand all nodes | collapse all nodes | view schema
WBVar00143101 | Evidence | Paper_evidence | WBPaper00031010 | ||||||
---|---|---|---|---|---|---|---|---|---|
Name | Public_name | e306 | |||||||
Other_name | CE36501:p.Trp184Ter | ||||||||
T07A5.2.1:c.552G>A | |||||||||
HGVSg | CHROMOSOME_III:g.10315933C>T | ||||||||
Sequence_details | SMap | S_parent | Sequence | T07A5 | |||||
Flanking_sequences | acggaaagttcgtgaccaggacgtcgagtg | ggttattgcttcgatgtacatctaaacgcg | |||||||
Mapping_target | T07A5 | ||||||||
Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00031010 | ||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00004144 | ||||||||
WBStrain00027163 | |||||||||
WBStrain00027198 | |||||||||
WBStrain00027199 | |||||||||
Laboratory | CB | ||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00006785 | |||||||
Transcript | T07A5.2.1 | VEP_consequence | stop_gained | ||||||
VEP_impact | HIGH | ||||||||
HGVSc | T07A5.2.1:c.552G>A | ||||||||
HGVSp | CE36501:p.Trp184Ter | ||||||||
cDNA_position | 584 | ||||||||
CDS_position | 552 | ||||||||
Protein_position | 184 | ||||||||
Exon_number | 4/6 | ||||||||
Codon_change | tgG/tgA | ||||||||
Amino_acid_change | W/* | ||||||||
Interactor | WBInteraction000503020 | ||||||||
Isolation | Mutagen | EMS | Paper_evidence | WBPaper00031010 | |||||
Genetics | Interpolated_map_position | III | 2.3086 | ||||||
Mapping_data | In_2_point | 56 | |||||||
75 | |||||||||
In_multi_point (20) | |||||||||
In_pos_neg_data | 650 | ||||||||
1619 | |||||||||
2722 | |||||||||
3243 | |||||||||
5726 | |||||||||
5734 | |||||||||
Description | Phenotype | WBPhenotype:0000002 | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | weak kinker | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Ease_of_scoring | ES3_Easy_to_score | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000032 | Paper_evidence | WBPaper00000484 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | Animals are severely debilitated at 25 C. | Paper_evidence | WBPaper00000484 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00000484 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Temperature_sensitive | Heat_sensitive | 25 | Paper_evidence | WBPaper00000484 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000421 | Paper_evidence | WBPaper00000484 | |||||||
WBPaper00035548 | |||||||||
Person_evidence | WBPerson261 | ||||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPerson712 | |||||||||
Remark | resistant to 1 mM levamisole; extracts lack levamisole binding. | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Recessive | Paper_evidence | WBPaper00000484 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Affected_by | Molecule | WBMol:00004019 | Paper_evidence | WBPaper00000484 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
Phenotype_assay | Treatment | 1mM levamisole | Paper_evidence | WBPaper00000484 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000519 | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | extracts lack levamisole binding | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000554 | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | sensitive to hypoosmotic shock | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000643 | Paper_evidence | WBPaper00000031 | |||||||
WBPaper00000484 | |||||||||
WBPaper00035548 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
WBPerson2021 | |||||||||
WBPerson712 | |||||||||
Remark | No backward motion in L1 larvae. Newly hatched larvae can barely move forward. Adults have a mild Unc defect where the mutants move forward in a slow decayed sine wave. | Paper_evidence | WBPaper00000484 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00000484 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
EQ_annotations | Life_stage | WBls:0000024 | PATO:0000460 | Paper_evidence | WBPaper00000484 | ||||
Curator_confirmed | WBPerson2021 | ||||||||
WBls:0000041 | PATO:0000460 | Paper_evidence | WBPaper00000484 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000646 | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | slow but fairly active | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001852 | Paper_evidence | WBPaper00035074 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | Mutants are resistant to tribendimidine | Paper_evidence | WBPaper00035074 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Phenotype_not_observed | WBPhenotype:0000315 | Paper_evidence | WBPaper00000484 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00000484 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000478 | Paper_evidence | WBPaper00000484 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | Mutants tend to remain within the borders of bacterial lawns as does the wild-type. | Paper_evidence | WBPaper00000484 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00000484 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0001084 | Paper_evidence | WBPaper00000484 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | Attraction to sodium chloride is normal (See methods). | Paper_evidence | WBPaper00000484 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00000484 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0001414 | Paper_evidence | WBPaper00000484 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00000484 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Reference | WBPaper00035548 | ||||||||
WBPaper00035074 | |||||||||
WBPaper00000031 | |||||||||
WBPaper00000484 | |||||||||
Method | Substitution_allele |