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WormBase Tree Display for Gene: WBGene00003017

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Name Class

WBGene00003017SMapS_parentSequenceK10G6
IdentityVersion1
NameCGC_namelin-31Person_evidenceWBPerson261
Sequence_nameK10G6.1
Molecular_nameK10G6.1
K10G6.1.1
CE12098
Other_nameK10G6.aCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_K10G6.1Accession_evidenceNDBBX284602
Public_namelin-31
DB_infoDatabaseAceViewgene2E275
WormQTLgeneWBGene00003017
WormFluxgeneWBGene00003017
NDBlocus_tagCELE_K10G6.1
PanthergeneCAEEL|WormBase=WBGene00003017|UniProtKB=P34683
familyPTHR11829
NCBIgene173740
RefSeqproteinNM_062303.5
SwissProtUniProtAccP34683
UniProt_GCRPUniProtAccP34683
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:30WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlin
Reference_alleleWBVar00089401
Allele (127)
Legacy_informationn301 : adult hermaphrodite Muv vulva either functional or nonfunctional protrusion 0-4 small ventral protrusions. ES3. Male gross morphology wildtype ME0. Similar phenotype in n301/Df. NA11 (e1750 n376 etc.).
See also e1750, e2181, n301, n376, n428, n429, n435, n1048, n1049, n1050, n1053, n1282, n1289, n1290, n1291, n1292, n1293, n1294, n1300, n1301
[C.elegansII] n301 : adult hermaphrodite Muv, vulva either functional or nonfunctional protrusion; 0-4 small ventral protrusions. VPC cells adopt 1ary/2ary/3ary fate at random.ES3 (adult). Male gross morphology wildtype ME0. Similar phenotype in n301/Df. Mosaic analysis indicates cell-autonomous action.OA>10: e1750, e2181, n376, n428, n1301 etc. Cloned: 1.5 transcript, expressed throughout development, encodes predicted 237 aa protein with similarity to fork head/HNF-3 transcription factors. lin-31:GFP expressed in P3.p - P8.p. [Miller et al. 1993; SD]
Strain (19)
RNASeq_FPKM (74)
GO_annotation (15)
OrthologWBGene00061465Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00037861Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00148005Caenorhabditis brenneriFrom_analysisOMA
WBGene00137835Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00090732Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00230666Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g6365Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g3132Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g643Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g246Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g12598Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g24410Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g6304Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g13175Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g20408Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g3295Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g14814Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-lin-31Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp5_scaffold_03533.g30495Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_08423Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_003726Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01954Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g16978Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20237000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g4161Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00246832Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00277910Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00268042Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00288745Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0004897Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0004898Drosophila melanogasterFrom_analysisOrthoFinder
OrthoInspector
PhylomeDB
ZFIN:ZDB-GENE-990616-47Danio rerioFrom_analysisHieranoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-081104-320Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-990415-77Danio rerioFrom_analysisHieranoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:3799Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:23315Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1347468Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1927549Mus musculusFrom_analysisHieranoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1585019Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00001434Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001438Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001440Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001441Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001442Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00002601Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00004013Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006853Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003976Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000912Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionlin-31 encodes a winged helix (WH)-like transcription factor that is a member of the HNF3/Forkhead family of DNA-binding proteins; LIN-31 acts as a tissue-specific effector of MAP kinase-mediated signaling in the vulva; when MAP kinase is inactive, LIN-31 forms a complex with LIN-1/Ets that inhibits vulval cell fates; upon MAP kinase activation (vulval induction), LIN-31 becomes phosphorylated, dissociates from LIN-1, and goes on to promote primary and secondary vulval cell fates; LIN-31 is expressed in the vulval precursor cells.Paper_evidenceWBPaper00003087
WBPaper00005344
Curator_confirmedWBPerson1843
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnables sequence-specific DNA binding activity. Involved in vulval development. Located in nucleus. Expressed in several structures, including P11.p; P9.p; gonad; nerve ring; and vulval precursor cell. Is an ortholog of human FOXB2 (forkhead box B2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSK10G6.1
Corresponding_transcriptK10G6.1.1
Other_sequenceGR12061
FC540606.1
XIC04591_1
Acan_isotig11162
Oden_isotig20815
Hbac_isotig03213
ACC18989_1
Dviv_isotig22537
GRC00772_1
Associated_feature (13)
Transcription_factorWBTranscriptionFactor000183
Experimental_infoRNAi_result (18)
Expr_patternExpr1086
Expr1430
Expr1513
Expr6382
Expr7614
Expr10798
Expr1018210
Expr1154262
Expr2013174
Expr2031406
Drives_construct (27)
Construct_productWBCnstr00000529
AntibodyWBAntibody00000176
WBAntibody00000914
Microarray_results (21)
Expression_cluster (96)
Interaction (54)
WBProcessWBbiopr:00000025
Map_infoMapIIPosition-5.87555Error0.040806
Well_ordered
PositiveInside_rearrnDf2
nDf3
nDf4
mDf14
mDf15
mDf16
Positive_cloneK10G6Inferred_automaticallyFrom sequence, transcript, pseudogene data
NegativeOutside_rearrmDf13
Mapping_data2_point783
784
Multi_point (21)
Pos_neg_data (18)
Landmark_gene
Reference (181)
MethodGene