WormBase Tree Display for Gene: WBGene00017389

WBGene00017389 SMap: S_parent: Sequence: CHROMOSOME_III
  Identity: Version: 2
    Name: CGC_name: lgc-38 Person_evidence: WBPerson2536
            WBPerson1430
      Sequence_name: F11H8.2
      Molecular_name: F11H8.2a
        F11H8.2a.1
        CE52928
        F11H8.2b
        CE52825
        F11H8.2b.1
      Other_name: CELE_F11H8.2 Accession_evidence: NDB BX284603
      Public_name: lgc-38
    DB_info: Database: AceView gene 3I109
        WormQTL gene WBGene00017389
        WormFlux gene WBGene00017389
        NDB locus_tag CELE_F11H8.2
        Panther gene CAEEL|WormBase=WBGene00017389|UniProtKB=A0A3P6NNS2
          family PTHR18945
        NCBI gene 3565717
        RefSeq protein NM_066131.8
            NM_001368434.4
        TrEMBL UniProtAcc A0A3P6MY79
            A0A3P6NNS2
        UniProt_GCRP UniProtAcc A0A3P6NNS2
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 18 Jan 2008 14:49:34 WBPerson2970 Name_change: CGC_name: lgc-38
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lgc
    Allele (163)
    Strain (3)
    RNASeq_FPKM (74)
    GO_annotation (19)
    Ortholog (36)
    Paralog (100)
    Structured_description: Concise_description: F11H8.2 encodes an UNC-49-like GABA receptor subunit. Paper_evidence: WBPaper00003576
          Curator_confirmed: WBPerson1843
          Date_last_updated: 24 Aug 2007 00:00:00
      Automated_description: Predicted to enable transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to contribute to chloride channel activity. Predicted to be involved in chloride transmembrane transport. Predicted to be located in neuron projection and synapse. Expressed in AIYL; AIYR; head; and tail. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F11H8.2a
      F11H8.2b
    Corresponding_CDS_history: F11H8.2:wp121
      F11H8.2:wp268
    Corresponding_transcript: F11H8.2a.1
      F11H8.2b.1
    Other_sequence (13)
    Associated_feature (11)
  Experimental_info: RNAi_result: WBRNAi00010326 Inferred_automatically: RNAi_primary
      WBRNAi00005699 Inferred_automatically: RNAi_primary
      WBRNAi00013151 Inferred_automatically: RNAi_primary
      WBRNAi00039918 Inferred_automatically: RNAi_primary
      WBRNAi00044418 Inferred_automatically: RNAi_primary
      WBRNAi00005510 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram670
      Chronogram1935
      Expr5189
      Expr10069
      Expr13164
      Expr1023160
      Expr1037476
      Expr1148366
      Expr2013117
      Expr2031349
    Drives_construct: WBCnstr00002880
      WBCnstr00003601
      WBCnstr00015041
    Construct_product: WBCnstr00038769
    Microarray_results (24)
    Expression_cluster: WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_larva_enriched
      WBPaper00037950:all-neurons_larva_SelectivelyEnriched
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_embryo_enriched
      WBPaper00037950:dopaminergic-neurons_embryo_SelectivelyEnriched
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_larva_enriched
      WBPaper00037950:glr-1(+)-neurons_larva_SelectivelyEnriched
      WBPaper00038061:aldicarb_upregulated
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00044736:flat_dev_expression
      WBPaper00045390:tunicamycin_downregulated
      WBPaper00048988:neuron_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053664:ins-11(tm1053)_upregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055137:S.maltophilia_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056617:adr-1_upregulated_embryo_transcript
      WBPaper00056619:CEPsh_enriched
      WBPaper00056826:hmc_biased
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057068:numr-1(RNAi)_downregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058948:npr-8(ok1439)_downregulated_OP50
      WBPaper00058948:PA14_downregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059824:rnp-6(dh1127)_regulated_OP50
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060921:cat-2(e1112)_upregulated
      WBPaper00061340:AIA
      WBPaper00061340:AIM
      WBPaper00061340:AIN
      WBPaper00061340:AIY
      WBPaper00061340:ALN
      WBPaper00061340:AVB
      WBPaper00061340:AVH
      WBPaper00061340:AVK
      WBPaper00061340:RIC
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061527:ckr-1-T09B9.3
      WBPaper00061527:srj-42-srw-113
      WBPaper00061651:BDU_enriched
      WBPaper00061651:LUA_enriched
      WBPaper00061651:MI_enriched
      WBPaper00061651:OLQ_enriched
      WBPaper00061651:SIA_enriched
      WBPaper00061651:URA_enriched
      WBPaper00061651:URY_enriched
      WBPaper00061651:VA12_enriched
      WBPaper00061651:VB02_enriched
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00065841:6_0
      WBPaper00065841:6_1
      WBPaper00065841:6_2
      WBPaper00065841:6_3
      WBPaper00065841:20_1
      WBPaper00065841:23_0
      WBPaper00065841:44_1
      WBPaper00065841:46_0
      WBPaper00065841:55_0
      WBPaper00065841:59_0
      WBPaper00065841:67_0
      WBPaper00065841:72_0
      WBPaper00065841:74_0
      WBPaper00065841:80_0
      WBPaper00065841:104_0
      WBPaper00065841:108_0
      WBPaper00065841:133_0
      WBPaper00065841:136_0
      WBPaper00065993:glp-1(e2141)_upregulated
      cgc4489_group_18
      WBPaper00026929:Resveratrol_regulated_N2
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00027111:rde-3(ne298)_downregulated
      WBPaper00027111:rde-3(r459)_downregulated
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00035084:embryo_enriched_AIN-2_IP
      WBPaper00035084:L1_enriched_AIN-2_IP
      WBPaper00035084:L2_enriched_AIN-2_IP
      WBPaper00035084:L3_enriched_AIN-2_IP
      WBPaper00035084:L4_enriched_AIN-2_IP
      WBPaper00035560:ahr-1_downregulated
      WBPaper00036123:Fluoranthene_regulated
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00042548:miRISC_enriched
      WBPaper00045960:L1-L4-lethargus_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00048989:N2_allantoin_upregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
    Interaction: WBInteraction000197760
      WBInteraction000337916
      WBInteraction000390885
      WBInteraction000399102
  Map_info: Map: III Position: -0.850117 Error: 0.000567
    Positive: Positive_clone: F11H8 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027250
    WBPaper00038491
    WBPaper00045634
    WBPaper00055090
    WBPaper00063594
    WBPaper00064809
    WBPaper00065105
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene