Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00016575

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00016575SMapS_parentSequenceC41H7
Identity (6)
Gene_infoBiotypeSO:0001217
Gene_classlido
Allele (34)
RNASeq_FPKM (74)
GO_annotation00023644
Contained_in_operonCEOP2080
OrthologWBGene00025680Caenorhabditis briggsaeFrom_analysisOrthoMCL
FL83_24820Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_006763Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_20044630Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g3833Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00209024Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00211131Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00212450Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00215586Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00054578Caenorhabditis remaneiFrom_analysisWormBase-Compara
Paralog (17)
Structured_descriptionAutomated_descriptionPredicted to be located in nucleus.Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC41H7.5a
C41H7.5b
Corresponding_CDS_historyC41H7.5:wp88
C41H7.5:wp179
C41H7.5:wp230
Corresponding_transcriptC41H7.5a.1
C41H7.5b.1
Associated_featureWBsf987123
Experimental_infoRNAi_resultWBRNAi00011854Inferred_automaticallyRNAi_primary
Expr_patternExpr1037110
Expr1146317
Expr2001577
Expr2019800
Drives_constructWBCnstr00027969
Construct_productWBCnstr00027969
Microarray_results (14)
Expression_clusterWBPaper00032425:up_in_rde-4
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00037950:bodywall-muscle_larva_enriched
WBPaper00037950:coelomocytes_larva_enriched
WBPaper00037950:excretory-cell_larva_enriched
WBPaper00037950:intestine_larva_enriched
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00040560:hpl-2_embryo_downregulated
WBPaper00040560:hpl-2_L3_downregulated
WBPaper00042194:nhr-114(RNAi)_downregulated
WBPaper00042561:smg-2(RNAi)_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00044786:emr-1(gk119)_downregulated
WBPaper00045050:drh-3 (ne4253)_upregulated
WBPaper00045257:bar-1(ga80)_upregulated
WBPaper00045401:N.parisii_64h_upregulated
WBPaper00045521:Oogenic
WBPaper00045974:NSM_enriched_DSN-treated_RNAseq
WBPaper00046509:htz-1(ok3099)_upregulated
WBPaper00048988:neuron_expressed
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050053:muscle_enriched_Day4
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00053295:lin-22(icb38)_upregulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053321:mes-4(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055827:daf-2(e1370)_downregulated
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056169:rrf-3(pk1426)_upregulated_L1
WBPaper00056169:rrf-3(pk1426)_upregulated_L2
WBPaper00056169:rrf-3(pk1426)_upregulated_L3
WBPaper00056169:rrf-3(pk1426)_upregulated_L4
WBPaper00056218:daf-16(mu86)_upregulated_Day7
WBPaper00056284:ints-5(RNAi)_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056826:hmc_biased
WBPaper00057288:Cold_upregulated_transcript
WBPaper00058598:mex-1(or286)_downregulated
WBPaper00058598:spn-4(tm291)_downregulated
WBPaper00058691:set-2(bn129)_downregulated
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00058958:100mGy-irradiation-72h_upregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059739:hira-1(gk835598)_upregulated_L1
WBPaper00060100:SiNP_upregulated_mRNA
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060634:fhod-1(tm2363)_upregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00060909:atfs-1(et18)_downregulated
WBPaper00061274:microgravity_upregulated
WBPaper00061340:AVH_parent
WBPaper00061340:DVC_parent
WBPaper00061340:GLR
WBPaper00061340:Intestinal_and_rectal_muscle
WBPaper00061340:M1_parent
WBPaper00061340:M4_parent
WBPaper00061340:Neuroblast_ALM_BDU
WBPaper00061340:RIA_parent
WBPaper00061340:RID_parent
WBPaper00061478:pie-1(ne4433)_upregulated
WBPaper00061479:ubc-9(ne4833)_upregulated
WBPaper00061527:R07E4.5-skp-1_1608
WBPaper00062143:PQN-59_interacting
WBPaper00062146:MOG-7-degron_1h_regulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
WBPaper00064494:postdauer_upregulated_WholeAnimal
WBPaper00064539:nhr-114(gk849)_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065841:13_0
cgc4489_group_7
WBPaper00025032:cluster_74
WBPaper00025032:cluster_164
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00027111:rrf-1(pk1417)_upregulated
WBPaper00029437:dcr-1_upregulated
WBPaper00030839:Larval_Pan_Neuronal
WBPaper00031252:AIN-1_IP_enriched
WBPaper00031252:AIN-2_IP_enriched
WBPaper00031532:Larva_Pan_Neuronal_Enriched
WBPaper00032948:StarveUp4
WBPaper00034739:RIL17lessRIL14
WBPaper00035227:heat_shock_regulated
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00036286:Pattern_B
WBPaper00036286:Pattern_F
WBPaper00037695:CC_3-day
WBPaper00037695:WC_5-day
WBPaper00038060:SUMO-1_upregulated
WBPaper00038172:tax-6null_down_regulated
WBPaper00038427:lin-54_germline_changed
WBPaper00039866:ClassComp_daf-19_upregulated
WBPaper00040858:eQTL_regulated_old
WBPaper00040963:Q100_down
WBPaper00040963:Q200_down
WBPaper00040963:TA300_down
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041960:N2_fasting_upregulated_anytime
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00045263:isp-1(qm150)_upregulated
WBPaper00046853:AOBr_LakeStobenseeOct_upregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00048567:dnj-14_downregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00053550:daf-19(m86)_upregulated_3-fold-embryo
SAGE_tagSAGE:aatcccccaccacgcacStrandSense
Unambiguously_mapped
Interaction (35)
Map_infoPositivePositive_cloneC41H7Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII-9.04687
MethodGene