WormBase Tree Display for Gene: WBGene00015153

WBGene00015153 SMap: S_parent: Sequence: CHROMOSOME_V
  Identity: Version: 3
    Name: CGC_name: idpp-2 Person_evidence: WBPerson1820
      Sequence_name: B0348.5
      Molecular_name: B0348.5a
        B0348.5a.1
        CE50544
        B0348.5b
        CE50658
        B0348.5b.1
      Other_name: Y108G3B.a Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_B0348.5 Accession_evidence: NDB BX284605
      Public_name: idpp-2
    DB_info: Database: AceView gene 5A485
        WormQTL gene WBGene00015153
        WormFlux gene WBGene00015153
        NDB locus_tag CELE_B0348.5
        NCBI gene 181937
        RefSeq protein NM_001380574.2
            NM_001313107.4
        TrEMBL UniProtAcc A0A0K3AUN6
            A0A0K3AV61
        UniProt_GCRP UniProtAcc A0A0K3AV61
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 09 Mar 2015 14:30:37 WBPerson4025 Event: Acquires_merge: WBGene00077683
        3 04 Jan 2022 10:41:13 WBPerson1983 Name_change: CGC_name: idpp-2
      Acquires_merge: WBGene00077683
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: idpp
    Allele (96)
    RNASeq_FPKM (74)
    Ortholog (21)
    Structured_description: Automated_description: Enriched in DVA; intestine; pharyngeal-intestinal valve; and pm6 based on single-cell RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on tiling array; microarray; and RNA-seq studies. Is affected by seven chemicals including multi-walled carbon nanotube; Sirolimus; and antimycin based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: B0348.5a
      B0348.5b
    Corresponding_CDS_history: B0348.5:wp247
    Corresponding_transcript: B0348.5a.1
      B0348.5b.1
    Associated_feature (2)
  Experimental_info: RNAi_result: WBRNAi00036537 Inferred_automatically: RNAi_primary
      WBRNAi00024386 Inferred_automatically: RNAi_primary
      WBRNAi00027143 Inferred_automatically: RNAi_primary
      WBRNAi00061971 Inferred_automatically: RNAi_primary
      WBRNAi00024385 Inferred_automatically: RNAi_primary
      WBRNAi00038960 Inferred_automatically: RNAi_primary
      WBRNAi00009720 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1022073
      Expr1023605
      Expr1036484
      Expr1143136
      Expr1163306
      Expr2000154
      Expr2018372
    Microarray_results (21)
    Expression_cluster: WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00042561:smg-2(RNAi)_downregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044760:somatic_specific
      WBPaper00045316:prg-1_upregulated_L2
      WBPaper00045316:prg-1_upregulated_L3
      WBPaper00049377:MWCNT_downregulated
      WBPaper00050370:dpy-21(e428)_L3_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00053388:dauer_regulated_Cluster6
      WBPaper00053402:cco-1(RNAi)_downregulated
      WBPaper00053664:ins-11(tm1053)_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00054493:hpl-2(tm1489)_upregulated
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00055013:hmg-4(RNAi)_downregulated
      WBPaper00055013:spt-16(RNAi)_downregulated
      WBPaper00055060:flr-1(RNAi)_downregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin_upregulated
      WBPaper00055827:daf-2(e1370)_downregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055941:atfs-1(et15)_upregulated
      WBPaper00055941:nuo-6(qm200)_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056169:rrf-3(pk1426)_downregulated_L3
      WBPaper00056169:rrf-3(pk1426)_downregulated_L4
      WBPaper00056169:rrf-3(pk1426)_upregulated_L2
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056290:mdt-15(mg584)_upregulated
      WBPaper00056330:glycine_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00057068:ints-4(RNAi)_downregulated_Cadmium
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058927:high-redox-state_upregulated
      WBPaper00058969:RIS_depleted
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059231:alh-6(lax105)_L4_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059440:LAG-1_interacting_germline
      WBPaper00059739:hira-1(gk835598)_downregulated_L1
      WBPaper00059754:E.faecalis_OG1RF_upregulated
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060909:atfs-1(et18)_downregulated
      WBPaper00061340:DVA
      WBPaper00061340:Pharyngeal_intestinal_valve
      WBPaper00061340:pm6
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061466:nath-10(icb99)_downregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061479:mep-1(ne4629)_upregulated
      WBPaper00061479:ubc-9(ne4833)_upregulated
      WBPaper00061527:C54G4.4-Y45F3A.8
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062497:xpf-1(tm2842)_downregulated
      WBPaper00062534:fat-P-80_downregulated
      WBPaper00062534:fat-P-80_downregulated_ech-6(RNAi)
      WBPaper00064532:pals-25(icb98)_downregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066004:fust-1(csb21)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      cgc4489_group_1
      cgc4489_group_3
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026952:class_E
      WBPaper00026980:intestine_enriched
      WBPaper00027111:rrf-3(pk1426)_downregulated
      WBPaper00032948:FedUp
      WBPaper00034739:N2lessDR1350
      WBPaper00036130:mir-243_up_regulated
      WBPaper00038172:crh-1null_down_regulated
      WBPaper00038172:tax-6null_down_regulated
      WBPaper00039866:ClassComp_daf-19_downregulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040876:mir-35_downregulated
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_prime
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00046083:oga-1(ok1207)_OP50_downregulated
      WBPaper00046083:pmk-1(km25)_OP50_downregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_upregulated
      WBPaper00047070:N2_starvation_downregulated
      WBPaper00047070:N2_UV_downregulated
      WBPaper00047070:xpa-1_UV_downregulated
      WBPaper00050767:Octopamine_induced
      WBPaper00053550:daf-19(m86)_downregulated_3-fold-embryo
      [cgc6390]:Cluster_B
    Interaction: WBInteraction000302513
      WBInteraction000400148
      WBInteraction000445449
  Map_info: Positive: Positive_clone: B0348 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V -20.0706
  Reference: WBPaper00064648
  Method: Gene