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WormBase Tree Display for Gene: WBGene00015064

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Name Class

WBGene00015064SMapS_parentSequenceB0228
Identity (6)
Gene_infoBiotypeSO:0001217
Allele (27)
StrainWBStrain00001292
WBStrain00001293
RNASeq_FPKM (74)
GO_annotation (20)
Ortholog (41)
ParalogWBGene00019298Caenorhabditis elegansFrom_analysisInparanoid_8
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable S-methyl-5-thioadenosine phosphorylase activity. Predicted to be involved in L-methionine salvage from methylthioadenosine. Predicted to be located in cytosol. Expressed in Ea and Ep. Human ortholog(s) of this gene implicated in common bile duct neoplasm; diaphyseal medullary stenosis with malignant fibrous histiocytoma; and pancreatic cancer. Is an ortholog of human MTAP (methylthioadenosine phosphorylase).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:4608Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:7413)
DOID:1793Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:7413)
DOID:0050625Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:7413)
DOID:0080664Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:7413)
Molecular_infoCorresponding_CDSB0228.7
Corresponding_CDS_historyB0228.7:wp104
Corresponding_transcriptB0228.7.1
B0228.7.2
Other_sequence (53)
Associated_featureWBsf650267
WBsf650268
WBsf717712
WBsf988551
WBsf223391
Experimental_infoRNAi_resultWBRNAi00038767Inferred_automaticallyRNAi_primary
WBRNAi00090575Inferred_automaticallyRNAi_primary
WBRNAi00028014Inferred_automaticallyRNAi_primary
WBRNAi00094845Inferred_automaticallyRNAi_primary
WBRNAi00009610Inferred_automaticallyRNAi_primary
Expr_patternChronogram2076
Expr60
Expr5027
Expr1010623
Expr1036438
Expr1142976
Expr2000073
Expr2018290
Drives_constructWBCnstr00002185
WBCnstr00002186
WBCnstr00029116
Construct_productWBCnstr00029116
Microarray_results (19)
Expression_clusterWBPaper00029359_1183
WBPaper00029359_1280
WBPaper00029359_1310
WBPaper00029359_1362
WBPaper00029359_1364
WBPaper00029359_1444
WBPaper00029359_1504
WBPaper00029359_1578
WBPaper00029359_1604
WBPaper00032528:L3_enriched
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037946:LIN-39_interacting
WBPaper00037950:coelomocytes_embryo_enriched
WBPaper00037950:intestine_embryo_enriched
WBPaper00040134:nhr-49(RNAi)_regulated_protein
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00045774:clk-1_downregulated
WBPaper00045974:NSM_enriched_totalRNA_RNAseq
WBPaper00046121:endoderm_unique
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046509:htz-1(ok3099)_downregulated
WBPaper00046741:Garlic-Extract_upregulated_protein
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049217:TCER-1_downregulated
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
WBPaper00049942:HeatShock_upregulated_hsf-1(+)
WBPaper00050015:ifg-1(RNAi)_downregulated
WBPaper00050080:rbr-2(tm3141)_upregulated
WBPaper00050332:skn-1(RNAi)_downregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:body-muscle_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051265:F4_hrde-1(tm1200)_downregulated
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
WBPaper00053321:embryo-to-L1_upregulated_WT_SMARTseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_L1_SMARTseq
WBPaper00053321:PGCs_enriched_NuGen
WBPaper00053388:dauer_regulated_Cluster5
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056161:hermaphrodite_enriched_siRNA
WBPaper00056275:P.aeruginosa_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056826:SGP_biased
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00058725:sftb-1(cer6)_downregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059356:set-6(ok2195)_baz-2(tm0235)_regulated
WBPaper00059471:EGL-43_interacting
WBPaper00059609:malt-1_ilc-17.1_nfki-1_upregulated
WBPaper00059754:P.aeruginosa_PA14_upregulated
WBPaper00060084:cco-1(RNAi)_downregulated_N2
WBPaper00060100:SiNP_downregulated_mRNA
WBPaper00060661:sensory-neuron_enriched
WBPaper00060871:M.humicola-extract_1h_regulated
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061203:let-418(n3536)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061274:hypergravity_15xg_downregulated
WBPaper00061340:Intestine
WBPaper00061341:28C_48h_downregulated
WBPaper00061478:SUMO-conjugated_protein
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061527:C30H6.7-Y106G6H.5_2231
WBPaper00061530:nhr-49(e2144)_downregulated
WBPaper00061651:I1_enriched
WBPaper00061651:I3_enriched
WBPaper00061651:IL2_LR_enriched
WBPaper00061651:M3_enriched
WBPaper00062143:PQN-59_interacting
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064716:paraquat_downregulated
WBPaper00064727:daf-2(e1370)_upregulated
WBPaper00064735:bet-1(uth41)_vs_N2_upregulated
WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065984:pals-17(syb3980)_downregulated
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
cgc4386_cluster_2_5
cgc4489_group_17
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00025032:cluster_16
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00030839:Embryo_Pan_Neuronal
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00032165:differentially_expressed_with_age_medoid_4
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035873:osm-8_regulated
WBPaper00036286:Pattern_G
WBPaper00037695:WC_5-day
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00038231:Cry5B_2-fold_downregulated
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_aging
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041906:I-3690_vs_OP50_3d
WBPaper00044091:Bpseudomallei_repressed_12h
WBPaper00045263:0.1mM-paraquat_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00046548:dafachronic-acid_upregulated
WBPaper00048637:lin-35(n745)_starvation_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00057098:SiO2-nanoparticles_downregulated
[cgc5767]:cluster_5
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(41_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
Interaction (56)
Map_infoPositivePositive_cloneB0228Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII0.560503
ReferenceWBPaper00038491
WBPaper00055090
MethodGene