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WormBase Tree Display for Gene: WBGene00007898

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Name Class

WBGene00007898SMapS_parentSequenceC33D9
IdentityVersion1
NameSequence_nameC33D9.3
Molecular_nameC33D9.3a
C33D9.3a.1
CE33758
C33D9.3b
CE33759
C33D9.3b.1
Other_nameCELE_C33D9.3Accession_evidenceNDBBX284604
Public_nameC33D9.3
DB_infoDatabaseAceViewgene4J556
WormQTLgeneWBGene00007898
WormFluxgeneWBGene00007898
NDBlocus_tagCELE_C33D9.3
NCBIgene177691
RefSeqproteinNM_001392359.1
NM_001027870.8
TREEFAMTREEFAM_IDTF321090
TrEMBLUniProtAccQ86D16
Q86D17
UniProt_GCRPUniProtAccQ86D17
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (31)
RNASeq_FPKM (74)
Ortholog (15)
ParalogWBGene00010770Caenorhabditis elegansFrom_analysisTreeFam
Structured_descriptionAutomated_descriptionEnriched in intestine; muscle cell; neurons; and somatic gonad precursor based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; glp-1; and dpy-10 based on microarray; RNA-seq; and tiling array studies. Is affected by thirteen chemicals including Psoralens; allantoin; and Sirolimus based on RNA-seq and microarray studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC33D9.3a
C33D9.3b
Corresponding_CDS_historyC33D9.3:wp99
Corresponding_transcriptC33D9.3a.1
C33D9.3b.1
Other_sequenceCJC07555_1
Associated_featureWBsf716783
WBsf981796
WBsf997276
WBsf997277
WBsf230472
Experimental_infoRNAi_resultWBRNAi00041758Inferred_automaticallyRNAi_primary
WBRNAi00110801Inferred_automaticallyRNAi_primary
WBRNAi00011531Inferred_automaticallyRNAi_primary
Expr_pattern (4)
Drives_constructWBCnstr00033399
Construct_productWBCnstr00033399
Microarray_results (21)
Expression_clusterWBPaper00032425:down_in_zfp-1
WBPaper00032528:L3_enriched
WBPaper00037946:MAB-5_interacting
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044656:tatn-1(qd182)_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00045316:prg-1_upregulated_L3
WBPaper00045390:ubc-9(RNAi)_upregulated
WBPaper00045521:Gender_Neutral
WBPaper00045934:wrn-1(gk99)_upregulated
WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_downregulated
WBPaper00046337:polysomal_N2_vs_daf-2_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00048988:neuron_enriched
WBPaper00048988:neuron_expressed
WBPaper00049545:cco-1(RNAi)_upregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00049635:dop-1(vs100)_upregulated
WBPaper00050053:muscle_enriched_Day4
WBPaper00050344:AFD-neuron_enriched
WBPaper00050344:PLM-neuron_enriched
WBPaper00050412:cco-1(RNAi)_upregulated_N2
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:seam_expressed
WBPaper00051558:fog-2(q71)_regulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053388:dauer_regulated_Cluster1
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055226:ADR-2_target_N2
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Psora_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00055941:atfs-1(et15)_upregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056073:NHR-86_interacting_promoter
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056161:hermaphrodite_enriched_siRNA
WBPaper00056167:Cry5B_downregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056826:SGP_biased
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_downregulated
WBPaper00057154:HeatShock_downregulated_miRNA-target
WBPaper00057154:HeatShock_upregulated_mRNA
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058711:paraquat_downregulated
WBPaper00058725:sftb-1(cer6)_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00059027:neuron-synapses_depleted
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00059728:5ug_cholesterol_upregulated
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00059754:E.faecalis_OG1RF_upregulated
WBPaper00059754:P.aeruginosa_PA14_upregulated
WBPaper00060273:isp-1(qm150)_upregulated
WBPaper00060278:atp-2(RNAi)_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
WBPaper00060459:bcat-1(RNAi)_upregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061340:AIN
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061527:acy-2-F35C5.11
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:etr-1(lq61)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062590:Aging_downregulated_hypodermis
WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064637:cox-5B(RNAi)_upregulated
WBPaper00065029:cadmium_upregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065734:unc-25(e156)_upregulated
WBPaper00065746:eat-2(ad1113)_downregulated
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
cgc4489_group_25
WBPaper00024671:AFD_vs_AWB_upregulated
WBPaper00025141:N2_Expressed_Genes
WBPaper00026952:class_B
WBPaper00026980:intestine_enriched
WBPaper00031252:AIN-1_IP_enriched
WBPaper00032948:FedUp
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00036130:mir-243_up_regulated
WBPaper00036286:Pattern_C
WBPaper00038172:aak-2overexpression_down_regulated
WBPaper00040210:Diazinon_24C_regulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040963:Q100_up
WBPaper00040963:Q200_up
WBPaper00040963:TA300_up
WBPaper00041174:genotypic
WBPaper00041174:genotypic_prime
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00044091:Bpseudomallei_induced_8h
WBPaper00044091:Bpseudomallei_induced_12h
WBPaper00048567:dnj-14_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00055899:nitroguanidine_regulated
[cgc6390]:Cluster_B
InteractionWBInteraction000314610
WBInteraction000347547
WBInteraction000373418
WBInteraction000393603
WBInteraction000394016
WBInteraction000421968
WBInteraction000430624
WBInteraction000569479
Map_infoPositivePositive_cloneC33D9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIV3.96195
MethodGene