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WormBase Tree Display for Gene: WBGene00004893

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Name Class

WBGene00004893EvidencePaper_evidenceWBPaper00024174
SMapS_parentSequenceF53H8
IdentityVersion1
NameCGC_namesms-2
Sequence_nameF53H8.4
Molecular_nameF53H8.4
F53H8.4.1
CE04657
Other_nameCELE_F53H8.4Accession_evidenceNDBBX284606
Public_namesms-2
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:36WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsms
Allele (53)
RNASeq_FPKM (74)
GO_annotation (17)
Ortholog (28)
Paralog (4)
Structured_descriptionAutomated_descriptionPredicted to enable ceramide cholinephosphotransferase activity and sphingomyelin synthase activity. Predicted to be involved in ceramide biosynthetic process and sphingomyelin biosynthetic process. Predicted to be located in membrane.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF53H8.4
Corresponding_transcriptF53H8.4.1
Other_sequence (18)
Associated_featureWBsf670095
WBsf1003898
WBsf1003899
WBsf1022190
WBsf236979
WBsf236980
WBsf236981
Experimental_infoRNAi_resultWBRNAi00048202Inferred_automaticallyRNAi_primary
WBRNAi00032726Inferred_automaticallyRNAi_primary
Expr_patternExpr1015762
Expr1032432
Expr1152013
Expr2015927
Expr2034160
Drives_constructWBCnstr00035338
Construct_productWBCnstr00035338
Microarray_results (23)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032425:up_in_alg-1
WBPaper00032425:up_in_zfp-1
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044037:eat-2_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Oogenic
WBPaper00045974:NSM_enriched_totalRNA_RNAseq
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_3
WBPaper00049545:cco-1(RNAi)_upregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00050344:PLM-neuron_enriched
WBPaper00050412:cco-1(RNAi)_upregulated_N2
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050712:RC301_vs_DA650_4h-PA_upregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:body-muscle_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:pharynx_expressed
WBPaper00051039:germline_enriched
WBPaper00051265:F4_morc-1(tm6048)_upregulated
WBPaper00051558:aging_regulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:zidovudine_24h_regulated
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00053599:female_vs_male_upregulated
WBPaper00053599:mitosis_vs_meiosis_downregulated
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00055103:thoc-5(wy822)_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055386:daf-2(e1370)_downregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056161:hermaphrodite_enriched_siRNA
WBPaper00056167:Cry5B_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056826:hmc_biased
WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_downregulated
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00059609:malt-1_ilc-17.1_nfki-1_upregulated
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00059763:neuron_expressed
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061007:HB101_downregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061340:ALM_BDU
WBPaper00061340:Neuroblast_ALM_BDU
WBPaper00061340:Parents_of_U_F_B_DVA
WBPaper00061527:nrde-3-tra-4_10484
WBPaper00061527:R07E4.5-skp-1_1608
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00061902:CAMT-1_interacting
WBPaper00062103:neuron_enriched
WBPaper00062146:MOG-7-degron_2h_regulated
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062456:doxycycline_downregulated_CB4856_transcript
WBPaper00062456:doxycycline_downregulated_N2_transcript
WBPaper00062520:qui-1(db104)_upregulated
WBPaper00062672:let-418(n3536)_downregulated
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064315:mes-3(bn199)_upregulated_EGCs
WBPaper00064315:mes-3(bn199)_upregulated_PGCs
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064315:mes-4(bn73)_upregulated_PGCs
WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
WBPaper00064716:paraquat_upregulated
WBPaper00064769:him-17(me24)_downregulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065158:25C_vs_15C_upregulated_WholeAnimal
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_12
WBPaper00025032:cluster_13
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026980:intestine_enriched
WBPaper00028474:dys-1_downregulated
WBPaper00030839:Larval_Pan_Neuronal
WBPaper00030985:Serratia_marcesens_upregulated
WBPaper00031252:AIN-1_IP_enriched
WBPaper00031252:AIN-2_IP_enriched
WBPaper00031532:Larva_Pan_Neuronal_Enriched
WBPaper00035084:L2_enriched_AIN-2_IP
WBPaper00035084:L3_enriched_AIN-2_IP
WBPaper00035084:L4_enriched_AIN-2_IP
WBPaper00035873:dpy-9_regulated
WBPaper00035905:FBF-1_Associated
WBPaper00036123:Atrazine_regulated
WBPaper00036286:Pattern_F
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00040876:mir-35_upregulated
WBPaper00040963:Q100_down
WBPaper00040963:Q200_down
WBPaper00040963:TA100_down
WBPaper00040963:TA300_down
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_3h
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00045263:isp-1(qm150)_upregulated
WBPaper00048567:dnj-14_downregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00050538:Fasting_upregulated
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(53_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
Map_infoMapXPosition-18.9164Error0.002326
PositivePositive_cloneF53H8Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00024174
WBPaper00038491
WBPaper00039359
WBPaper00040560
WBPaper00042257
WBPaper00042609
WBPaper00055090
PictureWBPicture0000013061
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene