WormBase Tree Display for Gene: WBGene00003728

WBGene00003728 SMap: S_parent: Sequence: C28D4
  Identity: Version: 2
    Name: CGC_name: nhr-138 Person_evidence: WBPerson600
      Sequence_name: C28D4.9
      Molecular_name: C28D4.9
        C28D4.9.1
        CE35413
      Other_name: CELE_C28D4.9 Accession_evidence: NDB BX284604
      Public_name: nhr-138
    DB_info: Database: AceView gene 4K495
        WormQTL gene WBGene00003728
        WormFlux gene WBGene00003728
        NDB locus_tag CELE_C28D4.9
        Panther gene CAEEL|WormBase=WBGene00003728|UniProtKB=Q95QT4
          family PTHR47630
        NCBI gene 3565904
        RefSeq protein NM_069329.9
        TREEFAM TREEFAM_ID TF315528
        TrEMBL UniProtAcc Q95QT4
        UniProt_GCRP UniProtAcc Q95QT4
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 02 Mar 2018 10:40:20 WBPerson4025 Event: Split_into: WBGene00303043
      Split_into: WBGene00303043
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele (34)
    Strain: WBStrain00036714
    RNASeq_FPKM (74)
    GO_annotation: 00088597
      00088598
      00088599
      00088600
      00111709
      00111710
      00111711
      00111712
    Contained_in_operon: CEOP4336
    Ortholog (33)
    Paralog (217)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C28D4.9
    Corresponding_CDS_history (4)
    Corresponding_transcript: C28D4.9.1
    Other_sequence: CJC07132_1
    Associated_feature: WBsf646249
      WBsf659800
      WBsf716577
      WBsf717174
      WBsf718161
      WBsf997466
      WBsf1017992
      WBsf228862
      WBsf228863
      WBsf228864
    Transcription_factor: WBTranscriptionFactor000367
  Experimental_info: RNAi_result: WBRNAi00041414 Inferred_automatically: RNAi_primary
      WBRNAi00011297 Inferred_automatically: RNAi_primary
      WBRNAi00076172 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025967
      Expr1031740
      Expr1145445
      Expr2014038
      Expr2032278
    Drives_construct: WBCnstr00035913
    Construct_product: WBCnstr00035913
    Microarray_results (17)
    Expression_cluster: WBPaper00033065:clk-1(qm30)_upregulated
      WBPaper00037950:all-neurons_embryo_enriched
      WBPaper00037950:coelomocytes_embryo_enriched
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Oogenic
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00046805:csr-1(RNAi)_downregulated_Set1
      WBPaper00048988:neuron_expressed
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053321:lin-15B(RNAi)_downregulated_starved-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Psora_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00056284:ints-11(RNAi)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00057154:HeatShock_downregulated_mRNA
      WBPaper00057154:HeatShock_upregulated_miRNA-target
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059471:EGL-43_interacting
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061203:let-418(n3536)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061340:ADF
      WBPaper00061340:ASG
      WBPaper00061340:AWA
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061405:S.aureus_downregulated_starvation
      WBPaper00061651:ADF_enriched
      WBPaper00061651:ASH_enriched
      WBPaper00061651:ASK_enriched
      WBPaper00061651:BAG_enriched
      WBPaper00061902:camt-1(ok515)_regulated_AFD
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
      WBPaper00064716:paraquat_downregulated
      WBPaper00065841:55_0
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00033101:spr-5_regulated
      WBPaper00035084:L1_enriched_AIN-2_IP
      WBPaper00035084:L2_enriched_AIN-2_IP
      WBPaper00035084:L3_enriched_AIN-2_IP
      WBPaper00035084:L4_enriched_AIN-2_IP
      WBPaper00040210:Diazinon_24C_regulated
      WBPaper00042548:miRISC_enriched
      WBPaper00045673:colistin_upregulated
    Interaction: WBInteraction000526754
      WBInteraction000526817
      WBInteraction000526818
      WBInteraction000526819
      WBInteraction000530574
      WBInteraction000543711
  Map_info: Map: IV Position: 4.38835 Error: 0.000496
    Positive: Positive_clone: C28D4 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00028802
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene