WormBase Tree Display for Gene: WBGene00003619

WBGene00003619 Evidence: Paper_evidence: WBPaper00003416
  SMap: S_parent: Sequence: F43C1
  Identity: Version: 1
    Name: CGC_name: nhr-20 Person_evidence: WBPerson600
      Sequence_name: F43C1.4
      Molecular_name: F43C1.4
        F43C1.4.1
        CE28025
      Other_name: CELE_F43C1.4 Accession_evidence: NDB BX284603
      Public_name: nhr-20
    DB_info: Database: AceView gene 3F320
        WormQTL gene WBGene00003619
        WormFlux gene WBGene00003619
        NDB locus_tag CELE_F43C1.4
        Panther gene CAEEL|WormBase=WBGene00003619|UniProtKB=Q09565
          family PTHR46397
        NCBI gene 175546
        RefSeq protein NM_065448.7
        SwissProt UniProtAcc Q09565
        TREEFAM TREEFAM_ID TF321941
        UniProt_GCRP UniProtAcc Q09565
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele (45)
    Legacy_information: NMK. Nuclear hormone receptor superfamily. [AE]
      [C.elegansII] NMK. Nuclear hormone receptor superfamily. Sequenced: F43C1.4[AE]
    Strain: WBStrain00002155
    RNASeq_FPKM (74)
    GO_annotation: 00054762
      00054763
      00054764
      00054765
      00054766
      00054767
      00111278
      00111279
      00111280
      00111281
    Ortholog (29)
    Paralog (225)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in head and tail. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F43C1.4
    Corresponding_CDS_history: F43C1.4:wp52
    Corresponding_transcript: F43C1.4.1
    Other_sequence: ES744626.1
      CBC14188_1
      HBC13051_1
    Associated_feature (7)
    Transcription_factor: WBTranscriptionFactor000287
  Experimental_info: RNAi_result: WBRNAi00005221 Inferred_automatically: RNAi_primary
      WBRNAi00032172 Inferred_automatically: RNAi_primary
      WBRNAi00047163 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1185
      Expr6057
      Expr6058
      Expr7556
      Expr1017934
      Expr1031665
      Expr1151024
      Expr2014113
      Expr2032352
    Drives_construct: WBCnstr00002914
      WBCnstr00002915
      WBCnstr00010137
      WBCnstr00012701
      WBCnstr00035995
    Construct_product: WBCnstr00010137
      WBCnstr00016480
      WBCnstr00021750
      WBCnstr00035995
    Microarray_results (19)
    Expression_cluster: WBPaper00028867:HLH-1_induced_TF
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_larva_enriched
      WBPaper00037950:hypodermis_larva_SelectivelyEnriched
      WBPaper00037950:PVD-OLL-neurons_larva_enriched
      WBPaper00037950:PVD-OLL-neurons_larva_SelectivelyEnriched
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
      WBPaper00045521:Oogenic
      WBPaper00045729:gld-2(RNAi)_downregulated
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050990:hypodermis_enriched
      WBPaper00050990:hypodermis_expressed
      WBPaper00051039:germline_enriched
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053295:lin-22(icb38)_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053599:mitosis_vs_meiosis_downregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00057006:DietaryRestriction_downregulated
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057254:MWCNT_downregulated_mRNA
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059471:EGL-43_interacting
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00060278:atp-2(RNAi)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061007:HB101_downregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061527:pkn-1_20439-tbc-12_11015
      WBPaper00061572:oleic-acid-specific_mating_upregulated
      WBPaper00061651:ASI_enriched
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062590:Aging_upregulated_coelomocyte
      WBPaper00064071:NHR-49_interacting
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066085:hda-3(ok1991)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      cgc4489_group_2
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026980:intestine_enriched
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:hlh_1_enriched
      WBPaper00031003:total_muscle_depleted
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00032948:StarveUp1
      WBPaper00035084:L2_enriched_AIN-2_IP
      WBPaper00035084:L3_enriched_AIN-2_IP
      WBPaper00035084:L4_enriched_AIN-2_IP
      WBPaper00036286:Pattern_B
      WBPaper00037113:Chlorpyrifos_Diazinon_16C_regulated
      WBPaper00037611:GLD-2-associated
      WBPaper00037611:RNP-8-associated
      WBPaper00040210:Diazinon_24C_regulated
      WBPaper00040963:TA200_down
      WBPaper00040963:TA300_down
      WBPaper00040985:AIN-2_asynchronous_intestine
      WBPaper00040985:AIN-2_asynchronous_muscle
      WBPaper00040985:AIN-2_L4_intestine
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00045263:ProLongevity-mtROS_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(41_min)
      [cgc5767]:expression_class_MD_pd(53_min)
      [cgc5767]:expression_class_SM
      [cgc5767]:expression_class_SMD
      [cgc6390]:mixed_oogenesis-somatic
    Interaction (65)
  Map_info: Map: III Position: -3.52868 Error: 0.059109
    Positive: Positive_clone: F43C1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00003754
    WBPaper00012651
    WBPaper00015440
    WBPaper00022044
    WBPaper00027309
    WBPaper00062625
  Remark: Map III Position -3.810000
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene