WormBase Tree Display for Gene: WBGene00001887

WBGene00001887 SMap: S_parent: Sequence: ZK131
  Identity: Version: 1
    Name: CGC_name: his-13 Person_evidence: WBPerson160
      Sequence_name: ZK131.7
      Molecular_name: ZK131.7
        ZK131.7.1
        CE03253
      Other_name: CELE_ZK131.7 Accession_evidence: NDB BX284602
      Public_name: his-13
    DB_info: Database: AceView gene 2O111
        WormFlux gene WBGene00001887
        NDB locus_tag CELE_ZK131.7
        NCBI gene 191672
        RefSeq protein NM_064489.1
        SwissProt UniProtAcc P08898
        UniProt_GCRP UniProtAcc P08898
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:26 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: his
    Allele: WBVar01499702
      WBVar01498435
      WBVar01498941
    Legacy_information: [C.elegansII] NMK. Histone type H3. HIS3 cluster. [Roberts et al. 1989; EM]
    In_cluster: HIS3_cluster
    RNASeq_FPKM (74)
    GO_annotation (4)
    Ortholog (144)
    Paralog (22)
    Structured_description: Concise_description: his-13 encodes an H3 histone; his-13 is contained within the histone gene cluster HIS3. Paper_evidence: WBPaper00001150
          Curator_confirmed: WBPerson48
            WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Predicted to be part of nucleosome. Is an ortholog of several human genes including H3C1 (H3 clustered histone 1); H3C3 (H3 clustered histone 3); and H3C4 (H3 clustered histone 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: ZK131.7
    Corresponding_transcript: ZK131.7.1
    Other_sequence: Dviv_isotig00246
      FG354250.1
      Dviv_isotig00243
      SSC01579_1
      SS03303
    Associated_feature: WBsf222395
  Experimental_info: RNAi_result (12)
    Expr_pattern: Expr7195
      Expr1162655
    Drives_construct: WBCnstr00003907
      WBCnstr00036624
    Construct_product: WBCnstr00036624
    Antibody: WBAntibody00000455
      WBAntibody00000456
      WBAntibody00000457
      WBAntibody00000458
    Microarray_results (30)
    Expression_cluster: WBPaper00032528:L3_enriched
      WBPaper00038289:oocyte_protein
      WBPaper00044786:emr-1(gk119)_upregulated
      WBPaper00045217:prg-1_progressively_regulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00048988:neuron_expressed
      WBPaper00049098:heat-induced_hrde-1(tm1200)
      WBPaper00049905:Age_variant_expression
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_100-cell-embryo
      WBPaper00050163:chd-3(eh4)_upregulated_100-cell-embryo
      WBPaper00050468:hlh-30-dependent_Cry5B_regulated
      WBPaper00050599:nicotine(1mM)_upregulated
      WBPaper00051021:4-bromodiphenyl-ether_downregulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053295:lin-22(icb38)_downregulated
      WBPaper00053295:lin-22(ot267)_downregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00053368:F.oxysporum_regulated
      WBPaper00053771:up_at_3h-NaCl
      WBPaper00055013:HMG-3_interacting_protein
      WBPaper00055334:DLC-1_interacting
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055482:Tunicamycin_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056034:pals-25(jy9)_upregulated
      WBPaper00056826:SGP_biased
      WBPaper00057154:HeatShock_downregulated_mRNA
      WBPaper00057158:mdt-15(tm2182)_dependent_15C_downregulated
      WBPaper00058942:henn-1(pk2295)_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059605:simr-1(cmp36)_downregulated
      WBPaper00059739:hira-1(gk835598)_upregulated_adult
      WBPaper00059739:hira-1(gk835598)_upregulated_L1
      WBPaper00059739:hira-1(gk835598)_upregulated_L4
      WBPaper00059754:E.faecalis_OG1RF_upregulated
      WBPaper00060764:swsn-1(os22ts)_downregulated
      WBPaper00060908:TEBP-1_interacting
      WBPaper00061527:his-20_965-his-4
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062056:dpl-1(n2994)_downregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062325:etr-1(lq61)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00064130:Beta-Amyloid_24h_upregulated_mRNA
      WBPaper00064201:SNA-1_interacting
      WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
      WBPaper00065005:sams-3(RNAi)_upregulated
      WBPaper00065029:cadmium_upregulated
      WBPaper00065734:unc-25(e156)_upregulated
      WBPaper00065995:M.humicola-extract_downregulated_N2
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      cgc4489_group_22
      WBPaper00025032:cluster_145
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00034739:N2lessDR1350
      WBPaper00035227:heat_shock_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036123:Fluoranthene_regulated
      WBPaper00036375:depleted_in_PVD_OLL
      WBPaper00036383:ash-2_L3_regulated
      WBPaper00038060:SUMO-1_downregulated
      WBPaper00038304:octr-1_regulated
      WBPaper00039866:ClassComp_daf-19_upregulated
      WBPaper00040184:hcf-1up_sir-2.1nc_daf-2nc
      WBPaper00040963:Q50_up
      WBPaper00040963:Q100_up
      WBPaper00040963:Q200_up
      WBPaper00042128:gei-8(ok1671)_downregulated
      WBPaper00042178:hlh-29(tm284)_upregulated
      WBPaper00042236:flcn-1(ok975)_upregulated
      WBPaper00045401:N.parisii_34h_upregulated_N2
      WBPaper00048637:lin-35(n745)_starvation_downregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00050538:Fasting_upregulated
      WBPaper00053550:daf-19(m86)_upregulated_3-fold-embryo
      WBPaper00055899:nitroguanidine_regulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc5767]:cluster_7
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(53_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc6390]:mixed_oogenesis-somatic
    Interaction (179)
  Map_info: Map: II Position: 20.3
    Positive: Positive_clone: ZK131 Inferred_automatically: From sequence, transcript, pseudogene data
        ZK831
    Pseudo_map_position
  Reference (8)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene