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WormBase Tree Display for Gene: WBGene00009731

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Name Class

WBGene00009731SMapS_parentSequenceF45G2
IdentityVersion2
NameCGC_nameexo-1Person_evidenceWBPerson8161
Sequence_nameF45G2.3
Molecular_nameF45G2.3
F45G2.3.1
CE28728
Other_nameCELE_F45G2.3Accession_evidenceNDBBX284603
Public_nameexo-1
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
223 Mar 2009 10:34:01WBPerson9133Name_changeCGC_nameexo-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classexo
Allele (45)
StrainWBStrain00034463
WBStrain00028633
WBStrain00047360
RNASeq_FPKM (74)
GO_annotation (26)
Contained_in_operonCEOP3788
Ortholog (41)
ParalogWBGene00000794Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00019004Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020442Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionexo-1 encodes a 5'-3' exonuclease; by homology, EXO-1 is predicted to play a role in DNA metabolic processes, including recombination, double-strand break repair and DNA mismatch repair.Paper_evidenceWBPaper00037751
Curator_confirmedWBPerson1843
Date_last_updated13 Apr 2011 00:00:00
Automated_descriptionPredicted to enable 5'-3' DNA exonuclease activity and 5'-flap endonuclease activity. Predicted to be involved in DNA recombination and mismatch repair. Predicted to be located in nucleus. Is an ortholog of human EXO1 (exonuclease 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF45G2.3
Corresponding_CDS_historyF45G2.3:wp58
Corresponding_transcriptF45G2.3.1
Other_sequence (14)
Associated_featureWBsf645714
WBsf994888
WBsf226007
Experimental_infoRNAi_resultWBRNAi00006004Inferred_automaticallyRNAi_primary
WBRNAi00007873Inferred_automaticallyRNAi_primary
WBRNAi00047436Inferred_automaticallyRNAi_primary
WBRNAi00015041Inferred_automaticallyRNAi_primary
WBRNAi00097145Inferred_automaticallyRNAi_primary
Expr_patternExpr1023799
Expr1034257
Expr1151277
Expr2011396
Expr2029632
Drives_constructWBCnstr00031959
Construct_productWBCnstr00031959
Microarray_results (21)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032425:up_in_lin-35
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00035211:age-1_vs_age-1_downregulated
WBPaper00038168:lin-35_upregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044760:germline_specific
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
WBPaper00045571:germline-ablation_downregulated
WBPaper00046509:lin-35(n745)_upregulated
WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
WBPaper00048690:hermaphrodite-Z1-Z4-daughter_enriched
WBPaper00048690:male-Z1-Z4-daughter_enriched
WBPaper00048988:neuron_expressed
WBPaper00050193:cec-4(ok3124)_downregulated_L1
WBPaper00050193:met-2(n4256)set-25(n5021)_downregulated_L1
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050522:mafr-1(tm6082)_downregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051039:germline_enriched
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:PGCs_enriched_NuGen
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055648:germline_expressed
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058598:mex-3(eu149)_downregulated
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00059027:neuron-synapses_enriched
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060459:bcat-1(RNAi)_downregulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061274:hypergravity_10xg_upregulated
WBPaper00061340:B
WBPaper00061340:g1A_parent
WBPaper00061340:Germline
WBPaper00061341:28C_24h_downregulated
WBPaper00061527:pch-2-B0393.3
WBPaper00062056:lin-35(n745)_upregulated
WBPaper00062056:lin-36(we36)_upregulated
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062193:hsf-1(RNAi)_downregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00064871:hypoxia_upregulated_F1
WBPaper00065149:lin-52(n771)_upregulated
WBPaper00065373:Cisplatin_upregulated_WT
WBPaper00065373:sek-1(km4)_downregulated_cisplatin
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
WBPaper00025032:cluster_1
WBPaper00025032:cluster_6
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00035084:L1_enriched_AIN-2_IP
WBPaper00035905:FBF-1_Associated
WBPaper00036123:Cadmium_regulated
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_B
WBPaper00037695:LD_3-day
WBPaper00038427:lin-54_embryo_changed
WBPaper00040426:CYD-1_CDK-4_upregulated
WBPaper00040426:CYE-1_CDK-2AF_upregulated
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00040858:eQTL_regulated_aging
WBPaper00040858:eQTL_regulated_old
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00047070:N2_starvation_downregulated
WBPaper00048637:lin-35(n745)_starvation_upregulated
WBPaper00048989:N2_allantoin_upregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00056330:mrps-5(RNAi)_downregulated
[cgc5767]:cluster_1
[cgc5767]:expression_class_M
[cgc5767]:expression_class_MD
[cgc5767]:expression_class_MD_pd(41_min)
[cgc5767]:expression_class_MD_pd(53_min)
[cgc5767]:expression_class_SM
[cgc5767]:expression_class_SMD
[cgc6390]:Cluster_E
[cgc6390]:oogenesis-enriched
Interaction (109)
Map_infoMapIIIPosition21.2134Error6.3e-05
PositivePositive_cloneF45G2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00034413
WBPaper00036708
WBPaper00037751
WBPaper00038491
WBPaper00042018
WBPaper00042392
WBPaper00043790
WBPaper00051412
WBPaper00053104
WBPaper00055090
WBPaper00057769
WBPaper00058681
WBPaper00061557
WBPaper00064526
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene