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WormBase Tree Display for Gene: WBGene00009580

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Name Class

WBGene00009580SMapS_parentSequenceF40F9
IdentityVersion2
NameCGC_namexbx-6Person_evidenceWBPerson641
WBPerson3089
Sequence_nameF40F9.1
Molecular_name (10)
Other_nameCELE_F40F9.1Accession_evidenceNDBBX284605
Public_namexbx-6
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
201 Apr 2005 11:05:24WBPerson2970Name_changeCGC_namexbx-6
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classxbx
Allele (75)
StrainWBStrain00001364
WBStrain00029250
WBStrain00031668
RNASeq_FPKM (74)
GO_annotation00084480
00084481
00084482
00084483
00084484
00084485
OrthologWBGene00062860Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00038588Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00148497Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00134116Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00097622Pristionchus pacificusFrom_analysisOMA
WormBase-Compara
WBGene00027502Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00224230Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g764Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2037Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g2313Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g4803Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g18345Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g3336Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g8215Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g7943Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g9008Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g23794Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00289.g8566Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_V.g20278Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g20894Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g17636Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00259.g8141Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_08586Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_016976Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00058Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g21774Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50254400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g15315Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00243225Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00264187Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00294432Trichuris murisFrom_analysisWormBase-Compara
WBGene00302841Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0025692Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0013305Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0038209Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-040426-1367Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-041010-69Danio rerioFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-050320-88Danio rerioFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-060616-231Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-070912-289Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
Panther
PhylomeDB
SonicParanoid
HGNC:4589Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:17067Homo sapiensFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:23410Homo sapiensFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:1913418Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1919643Mus musculusFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:628744Rattus norvegicusFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:628873Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1359409Rattus norvegicusFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ParalogWBGene00006470Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006479Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00019664Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00021537Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in negative regulation of apoptotic signaling pathway. Predicted to be located in Golgi apparatus; endoplasmic reticulum; and membrane. Expressed in neurons; pharyngeal muscle cell; tail; and ventral nerve cord. Is an ortholog of human GRINA (glutamate ionotropic receptor NMDA type subunit associated protein 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF40F9.1a
F40F9.1b
Corresponding_CDS_historyF40F9.1:wp82
Corresponding_transcriptF40F9.1c
F40F9.1a.1
F40F9.1a.2
F40F9.1b.1
F40F9.1b.2
F40F9.1b.3
Other_sequence (53)
Associated_featureWBsf232286
WBsf232287
WBsf232288
Experimental_infoRNAi_result (11)
Expr_patternExpr3290
Expr3484
Expr6014
Expr10142
Expr1023948
Expr1034192
Expr1150748
Expr2018094
Expr2036232
Drives_constructWBCnstr00002254
WBCnstr00011287
WBCnstr00011417
Microarray_results (35)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032097:CGH-1-associated-mRNA
WBPaper00032528:L3_enriched
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00035269:cde-1_regulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00038061:aldicarb_upregulated
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044736:flat_dev_expression
WBPaper00045380:cep-1(gk138)_downregulated_UV
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00045729:gld-2(RNAi)_downregulated
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00050344:AFD-neuron_enriched
WBPaper00050344:PLM-neuron_enriched
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00051039:germline_enriched
WBPaper00051558:aging_regulated
WBPaper00053039:Aspirin_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_fed-L1_Truseq
WBPaper00053810:sod-2(ok1030)_upregulated
WBPaper00055334:DLC-1_interacting
WBPaper00055565:AVK_enriched
WBPaper00055648:germline_expressed
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056165:MINA-1_interacting_mRNA
WBPaper00058969:RIS_enriched
WBPaper00059027:neuron-synapses_depleted
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059356:set-6(ok2195)_baz-2(tm0235)_regulated
WBPaper00059471:EGL-43_interacting
WBPaper00059763:neuron_expressed
WBPaper00060014:set-2(zr2012)_downregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061527:cids-2_2203-attf-2_2451
WBPaper00061527:pch-2-B0393.3
WBPaper00061651:AFD_enriched
WBPaper00061651:VB01_enriched
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064055:trl-1(cas1077)_downregulated_starved
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064716:paraquat_upregulated
WBPaper00065120:body-muscle-transcriptome
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00066085:sin-3(syb2172)_downregulated
cgc4386_cluster_6_3
cgc4489_group_25
WBPaper00025099:MA_specific
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00030839:Larval_Pan_Neuronal
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031532:Larva_Pan_Neuronal_Enriched
WBPaper00034739:N2moreDR1350
WBPaper00034757:down_by_oxidative_stress
WBPaper00035227:heat_shock_regulated
WBPaper00035905:FBF-1_Associated
WBPaper00036123:Cadmium_regulated
WBPaper00037611:RNP-8-associated
WBPaper00037901:GLD-1_mRNA_targets
WBPaper00040210:Chlorpyrifos_24C_regulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040963:TA200_down
WBPaper00040963:TA300_down
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00044091:Bpseudomallei_induced_8h
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00048624:hlh-25(ok1710)_upregulated
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
Interaction (27)
Map_infoMapVPosition2.08834Error0.005872
PositivePositive_cloneF40F9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point5142
Pseudo_map_position
ReferenceWBPaper00025051
WBPaper00032078
WBPaper00038491
WBPaper00055090
WBPaper00059097
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene