WormBase Tree Display for Gene: WBGene00011427

WBGene00011427 SMap: S_parent: Sequence: T04C12
  Identity: Version: 2
    Name: Sequence_name: T04C12.1
      Molecular_name: T04C12.1
        T04C12.1.1
        CE42021
      Other_name: CELE_T04C12.1 Accession_evidence: NDB BX284605
      Public_name: T04C12.1
    DB_info: Database: AceView gene 5L538
        WormQTL gene WBGene00011427
        WormFlux gene WBGene00011427
        NDB locus_tag CELE_T04C12.1
        NCBI gene 179531
        RefSeq protein NM_073414.7
        TREEFAM TREEFAM_ID TF317716
        TrEMBL UniProtAcc A9UJP5
        UniProt_GCRP UniProtAcc A9UJP5
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 27 Mar 2008 16:32:15 WBPerson4025 Event: Split_into: WBGene00077693
      Split_into: WBGene00077693
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (12)
    RNASeq_FPKM (74)
    GO_annotation: 00005532
    Ortholog: WBGene00041512 Caenorhabditis briggsae From_analysis: OrthoMCL
      WBGene00156832 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00126942 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00085274 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00150041 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00041513 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g1298 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g12253 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g21769 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g4557 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g18218 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16192 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6102 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g4990 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g18262 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g2153 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00348.g9561 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_V.g19278 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold486.g1967 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      GCK72_016584 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11194 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_50311100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g15674 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00002368 Caenorhabditis elegans From_analysis: Panther
      WBGene00016052 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00016971 Caenorhabditis elegans From_analysis: Panther
      WBGene00015342 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00077693 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to be located in membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T04C12.1
    Corresponding_CDS_history: T04C12.1:wp186
      T04C12.1a:wp189
      T04C12.1b:wp189
    Corresponding_transcript: T04C12.1.1
    Other_sequence: Name_isotig04670
      CJC04613_1
      CBC06612_1
    Associated_feature: WBsf653061
      WBsf716829
      WBsf234488
  Experimental_info: RNAi_result: WBRNAi00052366 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025864
      Expr1035028
      Expr1155994
      Expr2005808
      Expr2024025
    Microarray_results: SMD_T04C12.1
      180448_s_at
      A_12_P108806
      A_12_P152120
      A_12_P152121
      A_12_P152122
      A_12_P152123
      A_12_P152124
      Aff_T04C12.1
      GPL13394_WBGene00011427
      GPL13914_T04C12.1
      GPL14144_T04C12.1_194-253_0.960_1_A
      GPL14144_T04C12.1_46-105_0.946_2_B
      GPL14144_T04C12.1_94-153_0.913_13_C
      GPL19516_CGZ0033080
      GPL21109_T04C12.1
      GPL3518_CE13142
      GPL8304_CE_WBGene00011427_A
      GPL8673_T04C12_1P00458
      GPL9450_T04C12.1
      cea2.p.123348
    Expression_cluster: WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:dopaminergic-neurons_larva_SelectivelyEnriched
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:intestine_embryo_enriched
      WBPaper00037950:intestine_embryo_SelectivelyEnriched
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
      WBPaper00044260:1-methylnicotinamide_downregulated
      WBPaper00044260:nicotic-acid_downregulated
      WBPaper00044316:CH3HgCl_7.5uM_downregulated
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00045420:fertilization_upregulated_transcript
      WBPaper00045934:wrn-1(gk99)_downregulated
      WBPaper00046121:endoderm_unique
      WBPaper00049334:CE_intestine_enriched
      WBPaper00049498:npr-1(ur89)_regulated_4
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051352:Long-Term-Association-Memory_upregulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:stavudine_72h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
      WBPaper00053713:Pheromone-induced_postdauer_vs_control_downregulated
      WBPaper00053771:down_by_skn-1(RNAi)_at_24h-NaCl
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00053888:drh-3(rrr2)_downregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00055971:nhl-2(ok818)_20C_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056167:Cry5B_upregulated
      WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
      WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
      WBPaper00057041:spc-1(cas971)_upregulated
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058711:skn-1(lax188)_upregulated
      WBPaper00058711:wdr-5(ok1417)_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059421:daf-1(m40);daf-3(mgDf90)_downregulated
      WBPaper00059421:daf-3(mgDf90)_downregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059728:5ug_cholesterol_downregulated
      WBPaper00059728:20ug_cholesterol_downregulated
      WBPaper00059824:rnp-6(dh1127)_regulated_OP50
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060399:pqm-1(ok485)_downregulated_CoCl2_6hr
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061274:hypergravity_15xg_downregulated
      WBPaper00061527:R07G3.8_9125-ric-4_17408
      WBPaper00061699:daf-18(ok480)_downregulated
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062440:crh-1(n3315)_downregulated
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00065005:sams-3(RNAi)_upregulated
      WBPaper00065005:sams-4(RNAi)_upregulated
      WBPaper00065029:cadmium_upregulated
      WBPaper00065158:25C_vs_15C_upregulated_WholeAnimal
      WBPaper00065560:E.coli-HB101_downregulated_F3
      WBPaper00065560:E.coli-HB101_downregulated_P0
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065749:endu-2(tm4977)_upregulated
      WBPaper00066204:CdCl2_downregulated_mRNA
      WBPaper00066232:ash-2(RNAi)_upregulated_WT
      WBPaper00066232:hsf-1(RNAi)_downregulated_ash-2
      cgc4386_cluster_4_6
      cgc4489_group_9
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:hlh_1_enriched
      WBPaper00031003:total_muscle_depleted
      WBPaper00031532:Larva_Pan_Neuronal_Depleted
      WBPaper00032948:StarveUp1
      WBPaper00035227:heat_shock_regulated
      WBPaper00036123:Cadmium_regulated
      WBPaper00037695:WC_5-day
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up
      WBPaper00040823:alg-1(gk214)_upregulated
      WBPaper00040876:mir-35_downregulated
      WBPaper00041207:CE_dauer_up
      WBPaper00041609:hpl-1_hpl-2_downregulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041960:N2_fasting_upregulated_9hto12h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00045673:colistin_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00057098:SiO2-nanoparticles_upregulated
    Interaction: WBInteraction000348567
      WBInteraction000360469
      WBInteraction000447735
      WBInteraction000452955
  Map_info: Positive: Positive_clone: T04C12 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 2.92327
  Method: Gene