| WBGene00021552 | SMap | S_parent | Sequence | Y44E3B |
|---|
| Identity | Version | 2 |
| | Name | CGC_name | zip-4 | Person_evidence | WBPerson1997 |
| | | | | | WBPerson460 |
| | | Sequence_name | Y44E3B.1 |
| | | Molecular_name (11) |
| | | Other_name | CELE_Y44E3B.1 | Accession_evidence | NDB | BX284601 |
| | | Public_name | zip-4 |
| | DB_info | Database | AceView | gene | 1D834 |
| | | | WormQTL | gene | WBGene00021552 |
| | | | WormFlux | gene | WBGene00021552 |
| | | | NDB | locus_tag | CELE_Y44E3B.1 |
| | | | Panther | gene | CAEEL|WormBase=WBGene00021552|UniProtKB=H2L0N3 |
| | | | | family | PTHR23334 |
| | | | NCBI | gene | 171900 |
| | | | RefSeq | protein | NM_001047238.7 |
| | | | | | NM_058732.5 |
| | | | | | NM_001381600.2 |
| | | | SwissProt | UniProtAcc | H2L0N3 |
| | | | TREEFAM | TREEFAM_ID | TF317778 |
| | | | UniProt_GCRP | UniProtAcc | H2L0N3 |
| | Species | Caenorhabditis elegans |
| | History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 |
| | | | 2 | 18 Jul 2005 13:34:00 | WBPerson2970 | Name_change | CGC_name | zip-4 |
| | Status | Live |
| Gene_info | Biotype | SO:0001217 |
| | Gene_class | zip |
| | Allele (54) |
| | RNASeq_FPKM (74) |
| | GO_annotation | 00023210 |
| | | 00023211 |
| | | 00023212 |
| | | 00023213 |
| | | 00023214 |
| | | 00023215 |
| | | 00023216 |
| | | 00023217 |
| | | 00125880 |
| | | 00125881 |
| | Ortholog (18) |
| | Paralog | WBGene00016754 | Caenorhabditis elegans | From_analysis | Panther |
| | | WBGene00016997 | Caenorhabditis elegans | From_analysis | Inparanoid_8 |
| | | | | | Panther |
| | | | | | WormBase-Compara |
| | | WBGene00017755 | Caenorhabditis elegans | From_analysis | Panther |
| | | WBGene00019327 | Caenorhabditis elegans | From_analysis | Panther |
| | | | | | WormBase-Compara |
| | Structured_description | Concise_description | zip-4 encodes, by alternative splicing, two isoforms of a putative C/EBP protein, divergently orthologous to human human CEBPA (OMIM:116897, mutated in acute myeloid leukemia), CEBPB (OMIM:189965), CEBPD (OMIM:116898), CEBPE (OMIM:600749, mutated in specific granule deficiency), and CEBPG (OMIM:138972); ZIP-4 is paralogous to CEBP-1; ZIP-4 is weakly expressed in what may be a ubiquitous, constitutive pattern, with higher expression in pharynx, vulva and spermatheca, and somewhat higher expression in the rest of the somatic gonad; ZIP-4 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00027309 |
| | | | | | WBPaper00029055 |
| | | | | Curator_confirmed | WBPerson1843 |
| | | | | Date_last_updated | 27 Mar 2008 00:00:00 |
| | | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in defense response to Gram-negative bacterium. Predicted to be located in nucleus. Expressed in gonad; pharynx; spermatheca; and vulva. | Paper_evidence | WBPaper00065943 |
| | | | | Curator_confirmed | WBPerson324 |
| | | | | | WBPerson37462 |
| | | | | Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase |
| | | | | Date_last_updated | 29 Nov 2023 00:00:00 |
| Molecular_info | Corresponding_CDS | Y44E3B.1a |
| | | Y44E3B.1b |
| | | Y44E3B.1c |
| | Corresponding_transcript | Y44E3B.1a.1 |
| | | Y44E3B.1a.2 |
| | | Y44E3B.1b.1 |
| | | Y44E3B.1b.2 |
| | | Y44E3B.1c.1 |
| | Other_sequence (16) |
| | Associated_feature | WBsf649017 |
| | | WBsf649018 |
| | | WBsf649019 |
| | | WBsf976653 |
| | | WBsf976654 |
| | | WBsf978452 |
| | | WBsf983097 |
| | | WBsf219116 |
| | | WBsf219117 |
| | Transcription_factor | WBTranscriptionFactor000863 |
| Experimental_info | RNAi_result | WBRNAi00056561 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00004619 | Inferred_automatically | RNAi_primary |
| | Expr_pattern | Expr7715 |
| | | Expr1024700 |
| | | Expr1039431 |
| | | Expr1160034 |
| | | Expr2018158 |
| | | Expr2036295 |
| | Drives_construct | WBCnstr00012860 |
| | | WBCnstr00024505 |
| | Construct_product | WBCnstr00021813 |
| | | WBCnstr00024505 |
| | Microarray_results (38) |
| | Expression_cluster | WBPaper00031040:TGF-beta_adult_downregulated |
| | | WBPaper00036375:enriched_in_PVD_OLL |
| | | WBPaper00037950:A-class-motor-neurons_L1-larva_expressed |
| | | WBPaper00037950:A-class-motor-neurons_L2-larva_expressed |
| | | WBPaper00037950:all-neurons_L1-larva_expressed |
| | | WBPaper00037950:all-neurons_L2-larva_expressed |
| | | WBPaper00037950:AVA-neuron_L1-larva_expressed |
| | | WBPaper00037950:AVE-neuron_L1-larva_expressed |
| | | WBPaper00037950:BAG-neuron_blastula-embryo_expressed |
| | | WBPaper00037950:bodywall-muscle_L2-larva_expressed |
| | | WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed |
| | | WBPaper00037950:coelomocytes_L2-larva_expressed |
| | | WBPaper00037950:dopaminergic-neurons_L1-larva_expressed |
| | | WBPaper00037950:excretory-cell_L2-larva_expressed |
| | | WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed |
| | | WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed |
| | | WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed |
| | | WBPaper00037950:hypodermis_L3-L4-larva_expressed |
| | | WBPaper00037950:intestine_L2-larva_expressed |
| | | WBPaper00038168:lin-15B(n744)_upregulated |
| | | WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray |
| | | WBPaper00044656:tatn-1(qd182)_downregulated |
| | | WBPaper00044736:flat_dev_expression |
| | | WBPaper00044786:emr-1(gk119)_downregulated |
| | | WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated |
| | | WBPaper00045521:Gender_Neutral |
| | | WBPaper00045571:germline-ablation_downregulated |
| | | WBPaper00048988:neuron_expressed |
| | | WBPaper00049942:hsf-1(RNAi)_upregulated |
| | | WBPaper00050234:lin-28(RNAi)_upregulated |
| | | WBPaper00050488:adult_vs_dauer_regulated_N2_20C |
| | | WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C |
| | | WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult |
| | | WBPaper00050990:arcade_intestinal-valve_expressed |
| | | WBPaper00050990:intestine_expressed |
| | | WBPaper00051039:germline_enriched |
| | | WBPaper00051404:alg-1(gk214)_upregulated |
| | | WBPaper00051558:fog-2(q71)_regulated |
| | | WBPaper00052884:emb-4(hc60)_downregulated |
| | | WBPaper00053184:sma-4(rax3)_downregulated |
| | | WBPaper00053289:DREAM-target |
| | | WBPaper00053302:stavudine_24h_regulated |
| | | WBPaper00053302:zidovudine_72h_regulated |
| | | WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII |
| | | WBPaper00055648:germline_expressed |
| | | WBPaper00055971:nhl-2(ok818)_25C_upregulated |
| | | WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047) |
| | | WBPaper00056275:P.aeruginosa_downregulated |
| | | WBPaper00056275:P.aeruginosa_downregulated_atf-7(qd22qd130)_dependent |
| | | WBPaper00056275:P.aeruginosa_upregulated |
| | | WBPaper00056826:SGP_biased |
| | | WBPaper00057288:Cold_upregulated_transcript |
| | | WBPaper00057288:iff-1(RNAi)_upregulated_transcript |
| | | WBPaper00058725:sftb-1(cer6)_downregulated |
| | | WBPaper00058725:sftb-1(cer6)_upregulated |
| | | WBPaper00059356:BAZ-2_SET-6_interacting |
| | | WBPaper00059763:neuron_expressed |
| | | WBPaper00060683:hlh-11(ko1)_downregulated |
| | | WBPaper00060909:atfs-1(cmh15)_upregulated |
| | | WBPaper00061007:HB101_downregulated |
| | | WBPaper00061007:S.aquatilis_downregulated |
| | | WBPaper00061274:hypergravity_15xg_upregulated |
| | | WBPaper00061340:AMso_parent |
| | | WBPaper00061340:g2_parent |
| | | WBPaper00061340:I2_grandparent |
| | | WBPaper00061340:Neuroblast_BAG_SMDVx |
| | | WBPaper00061340:PVQ_parent |
| | | WBPaper00061527:cyn-10_19153-K12H4.2 |
| | | WBPaper00061527:Y32B12B.2-F28C1.1 |
| | | WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20) |
| | | WBPaper00064716:paraquat_upregulated |
| | | WBPaper00065975:P-body_vs_WholeAnimal_enriched |
| | | WBPaper00065993:glp-1(e2141)_downregulated |
| | | WBPaper00066110:tetraploid_vs_diploid_downregulated |
| | | WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14 |
| | | cgc4489_group_2 |
| | | WBPaper00005124:cholesterol_10-9M_regulated |
| | | WBPaper00006465:II_ethanol_late_induction |
| | | WBPaper00025032:cluster_20 |
| | | WBPaper00025141:N2_Expressed_Genes |
| | | WBPaper00025141:unc-4::GFP_Expressed_Genes |
| | | WBPaper00026929:sir-2.1_overexpression_regulated |
| | | WBPaper00030839:Embryo_Pan_Neuronal |
| | | WBPaper00031532:Larva_Pan_Neuronal_Enriched |
| | | WBPaper00035084:embryo_enriched_AIN-2_IP |
| | | WBPaper00035873:dpy-9_regulated |
| | | WBPaper00035873:dpy-10_regulated |
| | | WBPaper00035905:FBF-1_Associated |
| | | WBPaper00036123:Cadmium_regulated |
| | | WBPaper00037147:heatshock_upregulated |
| | | WBPaper00037611:RNP-8-associated |
| | | WBPaper00037695:WC_5-day |
| | | WBPaper00037901:GLD-1_mRNA_targets |
| | | WBPaper00038231:Cry5B_1.5-fold_upregulated |
| | | WBPaper00038427:lin-54_embryo_changed |
| | | WBPaper00040858:eQTL_age_regulated_developing |
| | | WBPaper00040858:eQTL_regulated_juvenile |
| | | WBPaper00040963:TA300_down |
| | | WBPaper00041002:HF_3d_0.2mM_Down |
| | | WBPaper00041002:HF_3d_2.0mM_Down |
| | | WBPaper00041606:CE_B.thuringiensis-DB27_regulated |
| | | WBPaper00041606:CE_S.marcescens_regulated |
| | | WBPaper00041606:CE_X.nematophila_regulated |
| | | WBPaper00041939:control_vs_EtBr-exposed_48h |
| | | WBPaper00041939:control_vs_UVC-EtBr-exposed_3h |
| | | WBPaper00041939:control_vs_UVC-EtBr-exposed_51h |
| | | WBPaper00041939:control_vs_UVC-exposed_3h |
| | | WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h |
| | | WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h |
| | | WBPaper00042258:DA1877_downregulated_GravidAdult |
| | | WBPaper00042331:a-SWCNTs_downregulated |
| | | WBPaper00045263:nuo-6(qm200)_downregulated |
| | | WBPaper00047070:DAF-16-dependent_UV_response |
| | | WBPaper00047070:xpa-1_UV_upregulated |
| | | WBPaper00048989:eat-2(ad465)_rapamycin_upregulated |
| | | WBPaper00055899:nitroguanidine_regulated |
| | | [cgc5767]:expression_class_M |
| | | [cgc5767]:expression_class_MD |
| | | [cgc5767]:expression_class_MD_pd(23_min) |
| | | [cgc5767]:expression_class_SM |
| | | [cgc5767]:expression_class_SMD |
| | | [cgc6390]:Cluster_E |
| | | [cgc6390]:oogenesis-enriched |
| | Interaction | WBInteraction000277727 |
| | | WBInteraction000283869 |
| | | WBInteraction000314550 |
| | | WBInteraction000343998 |
| | | WBInteraction000357524 |
| | | WBInteraction000395026 |
| | | WBInteraction000449491 |
| | | WBInteraction000450460 |
| | | WBInteraction000505231 |
| | | WBInteraction000523841 |
| | | WBInteraction000523842 |
| | | WBInteraction000530032 |
| | | WBInteraction000531726 |
| | | WBInteraction000531904 |
| | | WBInteraction000533228 |
| | | WBInteraction000533374 |
| | | WBInteraction000533420 |
| | | WBInteraction000534440 |
| Map_info | Map | I | Position | -4.16186 | Error | 0.030517 |
| | Positive | Positive_clone | Y44E3B | Inferred_automatically | From sequence, transcript, pseudogene data |
| | Mapping_data | Multi_point | 5317 |
| | Pseudo_map_position |
| Reference | WBPaper00038491 |
| | WBPaper00051448 |
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission |
| Method | Gene |
