WormBase Tree Display for Gene: WBGene00004339

WBGene00004339 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: C39E9
  Identity: Version: 1
    Name: CGC_name: rfc-3 Person_evidence: WBPerson1551
      Sequence_name: C39E9.13
      Molecular_name: C39E9.13
        C39E9.13.1
        CE05396
      Other_name: CELE_C39E9.13 Accession_evidence: NDB BX284604
      Public_name: rfc-3
    DB_info: Database: AceView gene 4N861
        WormQTL gene WBGene00004339
        WormFlux gene WBGene00004339
        NDB locus_tag CELE_C39E9.13
        Panther gene CAEEL|WormBase=WBGene00004339|UniProtKB=Q18547
          family PTHR11669
        NCBI gene 178259
        RefSeq protein NM_070116.9
        TREEFAM TREEFAM_ID TF105724
        TrEMBL UniProtAcc Q18547
        UniProt_GCRP UniProtAcc Q18547
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rfc
    Allele (23)
    Strain: WBStrain00051187
    RNASeq_FPKM (74)
    GO_annotation: 00061616
      00061617
      00061618
      00061619
      00061620
      00061621
      00112692
      00112693
    Contained_in_operon: CEOP4528
    Ortholog (36)
    Paralog: WBGene00004338 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004340 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00018409 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable DNA binding activity. Predicted to contribute to DNA clamp loader activity. Predicted to be involved in DNA repair and DNA-templated DNA replication. Predicted to be located in nucleus. Predicted to be part of DNA replication factor C complex. Is an ortholog of human RFC3 (replication factor C subunit 3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C39E9.13
    Corresponding_transcript: C39E9.13.1
    Other_sequence (38)
    Associated_feature: WBsf659815
      WBsf977015
      WBsf229385
  Experimental_info: RNAi_result: WBRNAi00008506 Inferred_automatically: RNAi_primary
      WBRNAi00007957 Inferred_automatically: RNAi_primary
      WBRNAi00042218 Inferred_automatically: RNAi_primary
      WBRNAi00000155 Inferred_automatically: RNAi_primary
      WBRNAi00103213 Inferred_automatically: RNAi_primary
      WBRNAi00064084 Inferred_automatically: RNAi_primary
      WBRNAi00024783 Inferred_automatically: RNAi_primary
      WBRNAi00106721 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1021222
      Expr1032157
      Expr1146209
      Expr2015305
      Expr2033539
    Drives_construct: WBCnstr00035556
    Construct_product: WBCnstr00035556
    Microarray_results (22)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032097:CGH-1-associated-mRNA
      WBPaper00032425:up_in_lin-35
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038289:oocyte_protein
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
      WBPaper00045050:csr-1(hypomorph)_downregulated
      WBPaper00045521:Oogenic
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00045729:gld-2(RNAi)_downregulated
      WBPaper00046509:htz-1(ok3099)_upregulated
      WBPaper00046509:lin-35(n745)_upregulated
      WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050522:mafr-1(tm6082)_downregulated
      WBPaper00050686:glp-1(e2141)_downregulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053302:alovudine_24h_regulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053713:Starvation-induced_postdauer_vs_control_downregulated
      WBPaper00054191:H3.3(null)_L1_upregulated
      WBPaper00055049:S.gordonii_downregulated
      WBPaper00055103:thoc-5(wy822)_downregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00057154:HeatShock_downregulated_mRNA
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:mex-3(eu149)_downregulated
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058958:100mGy-irradiation-72h_downregulated
      WBPaper00059027:neuron-synapses_enriched
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00059728:5ug_cholesterol_downregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060459:bcat-1(RNAi)_downregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061274:hypergravity_15xg_upregulated
      WBPaper00061340:ABarpaaa_lineage
      WBPaper00061340:ADA_ADE_grandparent
      WBPaper00061340:ADL_parent
      WBPaper00061340:AMso_parent
      WBPaper00061340:ASK_parent
      WBPaper00061340:Ciliated_amphid_neuron
      WBPaper00061340:Ciliated_non_amphid_neuron
      WBPaper00061340:DVC_parent
      WBPaper00061340:g1A_parent
      WBPaper00061340:GLR
      WBPaper00061340:I1_parent
      WBPaper00061340:I2_grandparent
      WBPaper00061340:M1_parent
      WBPaper00061340:Neuroblast_AIZ_FLP
      WBPaper00061340:Neuroblast_AIZ_FLP_RMG
      WBPaper00061340:Neuroblast_ALM_BDU
      WBPaper00061340:Neuroblast_ASE_ASJ_AUA
      WBPaper00061340:Neuroblast_I6_M5
      WBPaper00061340:Neuroblast_IL1_IL2
      WBPaper00061340:Neuroblast_PVC_LUA
      WBPaper00061340:OLQ_grandparent
      WBPaper00061340:Parents_of_PHsh_hyp8_hyp9
      WBPaper00061340:PLM_ALN_grandparent
      WBPaper00061340:PLM_ALN_great_grandparent
      WBPaper00061340:PVQ_parent
      WBPaper00061340:RIC_parent
      WBPaper00061478:SUMO-conjugated_protein
      WBPaper00061479:HDA-1_interacting_protein
      WBPaper00061527:pch-2-B0393.3
      WBPaper00062056:lin-36(we36)_upregulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062456:doxycycline_downregulated_CB4856_protein
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00062590:Aging_upregulated_neuron
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064107:lin-35(n745)_upregulated
      WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
      WBPaper00064502:spe-44(fx110)_upregulated
      WBPaper00064505:tamoxifen_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065149:lin-52(n771)_upregulated
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065373:sek-1(km4)_upregulated_Ref
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_2
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00035084:L2_enriched_AIN-2_IP
      WBPaper00035873:dpy-10_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Fluoranthene_regulated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_B
      WBPaper00037901:GLD-1_mRNA_targets
      WBPaper00039866:ClassComp_daf-19_upregulated
      WBPaper00040426:CYD-1_CDK-4_upregulated
      WBPaper00040426:CYE-1_CDK-2AF_upregulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040963:TA300_down
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00053550:daf-19(m86)_upregulated_3-fold-embryo
      WBPaper00056330:mrps-5(RNAi)_downregulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(186_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_ME
      [cgc6390]:Cluster_F
      [cgc6390]:intrinsic
    Interaction: WBInteraction000009373
      WBInteraction000031221
      WBInteraction000032562
      WBInteraction000033695
      WBInteraction000034268
      WBInteraction000034687
      WBInteraction000034688
      WBInteraction000034735
      WBInteraction000034912
      WBInteraction000035191
      WBInteraction000036405
      WBInteraction000036931
      WBInteraction000037177
      WBInteraction000037749
      WBInteraction000037778
      WBInteraction000038273
      WBInteraction000038274
      WBInteraction000038435
      WBInteraction000038921
      WBInteraction000039936
      WBInteraction000041482
      WBInteraction000042992
      WBInteraction000042993
      WBInteraction000044911
      WBInteraction000044912
      WBInteraction000045417
      WBInteraction000045790
      WBInteraction000046616
      WBInteraction000047215
      WBInteraction000047774
      WBInteraction000047968
      WBInteraction000102252
      WBInteraction000102991
      WBInteraction000103539
      WBInteraction000104016
      WBInteraction000106462
      WBInteraction000113076
      WBInteraction000114695
      WBInteraction000116102
      WBInteraction000116307
      WBInteraction000119651
      WBInteraction000120856
      WBInteraction000123976
      WBInteraction000125394
      WBInteraction000125395
      WBInteraction000125583
      WBInteraction000128841
      WBInteraction000128842
      WBInteraction000128843
      WBInteraction000128844
      WBInteraction000128845
      WBInteraction000128846
      WBInteraction000128847
      WBInteraction000128848
      WBInteraction000136188
      WBInteraction000139179
      WBInteraction000139376
      WBInteraction000141056
      WBInteraction000146845
      WBInteraction000154123
      WBInteraction000154408
      WBInteraction000154409
      WBInteraction000154410
      WBInteraction000154411
      WBInteraction000154412
      WBInteraction000154413
      WBInteraction000154414
      WBInteraction000154415
      WBInteraction000154416
      WBInteraction000154417
      WBInteraction000154418
      WBInteraction000154419
      WBInteraction000154420
      WBInteraction000154421
      WBInteraction000173745
      WBInteraction000180043
      WBInteraction000181825
      WBInteraction000185733
      WBInteraction000192649
      WBInteraction000196822
      WBInteraction000198850
      WBInteraction000201033
      WBInteraction000201781
      WBInteraction000204648
      WBInteraction000204662
      WBInteraction000205349
      WBInteraction000211965
      WBInteraction000213309
      WBInteraction000213507
      WBInteraction000213917
      WBInteraction000220436
      WBInteraction000220941
      WBInteraction000222017
      WBInteraction000222540
      WBInteraction000225921
      WBInteraction000226308
      WBInteraction000227315
      WBInteraction000227864
      WBInteraction000232494
      WBInteraction000235462
      WBInteraction000237262
      WBInteraction000240348
      WBInteraction000250621
      WBInteraction000251743
      WBInteraction000253586
      WBInteraction000254850
      WBInteraction000256405
      WBInteraction000262460
      WBInteraction000264059
      WBInteraction000265326
      WBInteraction000265789
      WBInteraction000267572
      WBInteraction000269228
      WBInteraction000272491
      WBInteraction000273250
      WBInteraction000273251
      WBInteraction000273252
      WBInteraction000274403
      WBInteraction000274854
      WBInteraction000275309
      WBInteraction000277100
      WBInteraction000277791
      WBInteraction000281115
      WBInteraction000287343
      WBInteraction000288697
      WBInteraction000290279
      WBInteraction000290564
      WBInteraction000290619
      WBInteraction000290749
      WBInteraction000293775
      WBInteraction000294525
      WBInteraction000297277
      WBInteraction000298696
      WBInteraction000300108
      WBInteraction000308174
      WBInteraction000309262
      WBInteraction000309437
      WBInteraction000310204
      WBInteraction000314847
      WBInteraction000317517
      WBInteraction000318629
      WBInteraction000318709
      WBInteraction000329206
      WBInteraction000330000
      WBInteraction000333636
      WBInteraction000333731
      WBInteraction000336261
      WBInteraction000338320
      WBInteraction000340175
      WBInteraction000343090
      WBInteraction000344042
      WBInteraction000349565
      WBInteraction000351494
      WBInteraction000353266
      WBInteraction000357072
      WBInteraction000357932
      WBInteraction000359277
      WBInteraction000360021
      WBInteraction000370655
      WBInteraction000372534
      WBInteraction000375931
      WBInteraction000377353
      WBInteraction000380030
      WBInteraction000380218
      WBInteraction000380611
      WBInteraction000383134
      WBInteraction000383606
      WBInteraction000390649
      WBInteraction000393463
      WBInteraction000393618
      WBInteraction000396028
      WBInteraction000400538
      WBInteraction000400970
      WBInteraction000401833
      WBInteraction000402357
      WBInteraction000403999
      WBInteraction000405014
      WBInteraction000406907
      WBInteraction000408910
      WBInteraction000410880
      WBInteraction000414249
      WBInteraction000415232
      WBInteraction000417413
      WBInteraction000420248
      WBInteraction000422549
      WBInteraction000425029
      WBInteraction000425730
      WBInteraction000427711
      WBInteraction000427957
      WBInteraction000430766
      WBInteraction000432902
      WBInteraction000434087
      WBInteraction000434968
      WBInteraction000436472
      WBInteraction000437615
      WBInteraction000438252
      WBInteraction000454962
      WBInteraction000456252
      WBInteraction000457042
      WBInteraction000457338
      WBInteraction000458500
      WBInteraction000462928
      WBInteraction000465664
      WBInteraction000466374
      WBInteraction000468073
      WBInteraction000470060
      WBInteraction000512174
      WBInteraction000512180
      WBInteraction000523239
      WBInteraction000523240
      WBInteraction000523334
      WBInteraction000539885
      WBInteraction000539886
      WBInteraction000539935
      WBInteraction000549271
      WBInteraction000551011
      WBInteraction000559121
      WBInteraction000573526
      WBInteraction000575112
  Map_info: Map: IV Position: 7.86285 Error: 0.014603
    Positive: Positive_clone: C39E9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005736
    WBPaper00038491
    WBPaper00048493
    WBPaper00055090
    WBPaper00064957
  Remark: Sequence connection from [Boulton S, Vidal M]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene