WormBase Tree Display for Gene: WBGene00015574
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WBGene00015574 | SMap | S_parent | Sequence | C07G3 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | irg-1 | Person_evidence | WBPerson3965 | |||||
Sequence_name | C07G3.2 | ||||||||
Molecular_name | C07G3.2 | ||||||||
C07G3.2.1 | |||||||||
CE07993 | |||||||||
Other_name | CELE_C07G3.2 | Accession_evidence | NDB | BX284605 | |||||
Public_name | irg-1 | ||||||||
DB_info | Database | AceView | gene | 5D999 | |||||
WormQTL | gene | WBGene00015574 | |||||||
WormFlux | gene | WBGene00015574 | |||||||
NDB | locus_tag | CELE_C07G3.2 | |||||||
NCBI | gene | 182379 | |||||||
RefSeq | protein | NM_071582.5 | |||||||
TREEFAM | TREEFAM_ID | TF316991 | |||||||
TrEMBL | UniProtAcc | O16327 | |||||||
UniProt_GCRP | UniProtAcc | O16327 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 13 Jul 2009 13:51:47 | WBPerson9133 | Name_change | CGC_name | irg-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | irg | ||||||||
Allele | WBVar01986405 | ||||||||
WBVar01499528 | |||||||||
WBVar01499167 | |||||||||
WBVar00275780 | |||||||||
WBVar01499740 | |||||||||
WBVar02052507 | |||||||||
WBVar01500129 | |||||||||
WBVar01615940 | |||||||||
WBVar01615941 | |||||||||
WBVar00256408 | |||||||||
WBVar01615942 | |||||||||
WBVar01615943 | |||||||||
WBVar01615944 | |||||||||
WBVar02123282 | |||||||||
WBVar00454176 | |||||||||
WBVar00454177 | |||||||||
WBVar00454178 | |||||||||
WBVar00454179 | |||||||||
WBVar00264192 | |||||||||
WBVar00454180 | |||||||||
WBVar00206477 | |||||||||
WBVar00206478 | |||||||||
WBVar00206479 | |||||||||
WBVar02124044 | |||||||||
WBVar02121470 | |||||||||
WBVar01499483 | |||||||||
WBVar01498943 | |||||||||
WBVar01498944 | |||||||||
WBVar01499496 | |||||||||
WBVar01499316 | |||||||||
WBVar00999445 | |||||||||
WBVar00999446 | |||||||||
WBVar00999447 | |||||||||
WBVar00999448 | |||||||||
WBVar00999449 | |||||||||
WBVar00999450 | |||||||||
WBVar01500066 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00027834 | ||||||||
00027835 | |||||||||
00105960 | |||||||||
00105967 | |||||||||
00105968 | |||||||||
Ortholog (32) | |||||||||
Paralog | WBGene00007440 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
WormBase-Compara | |||||||||
WBGene00020747 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
WormBase-Compara | |||||||||
WBGene00010436 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00012927 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00012968 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00016495 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00020052 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | irg-1 encodes a protein containing a conserved DUF1768 domain, a domain of unknown function found as a stand-alone domain in bacterial and bacteriophage proteins as well as fused to proteins involved in riboflavin biosynthesis in bacteria and plants; irg-1 expression is induced in response to infection with pathogenic Pseudomonas aeruginosa, in a manner independent of the p38 MAPK pathway, but dependent upon the ZIP-2 bZIP transcription factor; irg-1 expression is also induced at a low level in response to cadmium exposure, in a manner that is dependent upon pmk-1. | Paper_evidence | WBPaper00028789 | |||||
WBPaper00035891 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 08 Feb 2010 00:00:00 | ||||||||
Automated_description | Involved in antibacterial innate immune response and defense response to Gram-negative bacterium. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C07G3.2 | |||||||
Corresponding_transcript | C07G3.2.1 | ||||||||
Other_sequence | CBC16326_1 | ||||||||
Associated_feature | WBsf231582 | ||||||||
Experimental_info | RNAi_result | WBRNAi00040026 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00010403 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr8898 | ||||||||
Expr1028122 | |||||||||
Expr1144099 | |||||||||
Expr2012816 | |||||||||
Expr2031055 | |||||||||
Drives_construct | WBCnstr00005926 | ||||||||
WBCnstr00013591 | |||||||||
WBCnstr00028740 | |||||||||
Construct_product | WBCnstr00020134 | ||||||||
WBCnstr00028740 | |||||||||
Microarray_results (19) | |||||||||
Expression_cluster (303) | |||||||||
Interaction (63) | |||||||||
WBProcess | WBbiopr:00000008 | ||||||||
WBbiopr:00000039 | |||||||||
Map_info (3) | |||||||||
Reference (17) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |