WormBase Tree Display for Gene: WBGene00011235

WBGene00011235 SMap: S_parent: Sequence: R11A5
  Identity: Version: 2
    Name: CGC_name: suro-1 Paper_evidence: WBPaper00037824
          Person_evidence: WBPerson1855
      Sequence_name: R11A5.7
      Molecular_name: R11A5.7
        R11A5.7.1
        CE32478
      Other_name: CELE_R11A5.7 Accession_evidence: NDB BX284601
      Public_name: suro-1
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 07 Dec 2010 15:49:41 WBPerson2970 Name_change: CGC_name: suro-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: suro
    Allele: WBVar00339052
      WBVar00339053
      WBVar00339054
      WBVar00339055
      WBVar00339056
      WBVar00604214
      WBVar00604215
      WBVar00604216
      WBVar00154678
      WBVar00154679
      WBVar01500105
      WBVar01499739
      WBVar01498288
      WBVar01499786
      WBVar01499054
      WBVar00652028
      WBVar00652029
      WBVar00652030
      WBVar00652031
      WBVar00652032
      WBVar00652033
      WBVar00652034
      WBVar00652035
      WBVar00652036
      WBVar00652037
      WBVar00652038
      WBVar00652039
      WBVar00254244
      WBVar00652040
      WBVar00652041
      WBVar00652042
      WBVar00652043
      WBVar00652044
      WBVar00652045
      WBVar00652046
      WBVar00652047
      WBVar00652048
      WBVar01345721
      WBVar00652049
      WBVar00652050
      WBVar01345722
      WBVar00652051
      WBVar02127917
      WBVar00262921
      WBVar00253903
      WBVar00262924
      WBVar00262927
      WBVar01475754
      WBVar00339046
      WBVar01498959
      WBVar00339047
      WBVar00339048
      WBVar00339049
      WBVar00339050
      WBVar00339051
    RNASeq_FPKM (74)
    GO_annotation (17)
    Ortholog (49)
    Paralog: WBGene00008521 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00021213 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00021645 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00021984 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00020283 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00020281 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00012168 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00013895 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004747 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable metallocarboxypeptidase activity. Predicted to be involved in proteolysis. Located in collagen and cuticulin-based cuticle extracellular matrix and cytoplasm. Expressed in hypodermis. Human ortholog(s) of this gene implicated in familial febrile seizures 11 and familial temporal lobe epilepsy 5. Is an ortholog of human CPA6 (carboxypeptidase A6). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0060752 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:17245)
      DOID:0111308 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:17245)
  Molecular_info: Corresponding_CDS: R11A5.7
    Corresponding_CDS_history: R11A5.7:wp90
    Corresponding_transcript: R11A5.7.1
    Other_sequence: Dviv_isotig23964
      JI470815.1
      Dviv_isotig29716
      JI168226.1
    Associated_feature: WBsf649350
      WBsf664490
      WBsf717527
      WBsf984299
      WBsf1010157
      WBsf219832
      WBsf219833
      WBsf219834
  Experimental_info: RNAi_result (7)
    Expr_pattern: Expr9163
      Expr9164
      Expr9165
      Expr1011156
      Expr1034932
      Expr1155426
      Expr2017139
      Expr2035275
    Drives_construct: WBCnstr00013759
      WBCnstr00013760
      WBCnstr00013761
      WBCnstr00030821
    Construct_product: WBCnstr00013760
      WBCnstr00013761
      WBCnstr00030821
    Microarray_results (22)
    Expression_cluster (255)
    Interaction (175)
  Map_info: Map: I Position: 2.38441 Error: 0.000942
    Positive: Positive_clone: R11A5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00037824
    WBPaper00038491
    WBPaper00055090
    WBPaper00059520
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene