WormBase Tree Display for Gene: WBGene00009560

WBGene00009560 SMap: S_parent: Sequence: F39D8
  Identity: Version: 2
    Name: CGC_name: psa-3 Person_evidence: WBPerson3204
      Sequence_name: F39D8.2
      Molecular_name (12)
      Other_name: CELE_F39D8.2 Accession_evidence: NDB BX284606
      Public_name: psa-3
    DB_info: Database: WormQTL gene WBGene00009560
        WormFlux gene WBGene00009560
        NDB locus_tag CELE_F39D8.2
        Panther gene CAEEL|WormBase=WBGene00009560|UniProtKB=Q0G825
          family PTHR11850
        NCBI gene 181631
        RefSeq protein NM_001313418.3
            NM_001270334.3
            NM_001083296.5
            NM_001083297.5
        SwissProt UniProtAcc Q0G825
        UniProt_GCRP UniProtAcc Q0G825
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 13 Jul 2005 13:25:29 WBPerson2970 Name_change: CGC_name: psa-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: psa
    Allele: WBVar00094757 Inferred_automatically: From strain object: HS178
      WBVar00221890
      WBVar01553315
      WBVar00221893
      WBVar01553316
      WBVar01553317
      WBVar00221894
      WBVar00221895
      WBVar01499519
      WBVar01553318
      WBVar00221896
      WBVar01553319
      WBVar01553320
      WBVar01553321
      WBVar01553322
      WBVar01553323
      WBVar01499710
      WBVar01988247
      WBVar01602577
      WBVar01693734
      WBVar01214817
      WBVar01214818
      WBVar01214819
      WBVar01661467
      WBVar00086452
      WBVar00526573
      WBVar00086453
      WBVar01214820
      WBVar00526574
      WBVar00086454
      WBVar01214821
      WBVar00526575
      WBVar01214822
      WBVar00086455
      WBVar00526576
      WBVar00086456
      WBVar01214823
      WBVar01214824
      WBVar00086457
      WBVar00526577
      WBVar01214825
      WBVar00526578
      WBVar00086458
      WBVar00103265
      WBVar00526579
      WBVar00086459
      WBVar01214826
      WBVar01214827
      WBVar00086460
      WBVar00526580
      WBVar00086461
      WBVar01214828
      WBVar00526581
      WBVar02152193
      WBVar00086462
      WBVar00526582
      WBVar01214829
      WBVar00086463
      WBVar01214830
      WBVar00526583
      WBVar00526584
      WBVar00086464
      WBVar01214831
      WBVar00086465
      WBVar00526585
      WBVar01214832
      WBVar00526586
      WBVar01214833
      WBVar01214834
      WBVar00526587
      WBVar01214835
      WBVar00526588
      WBVar01214836
      WBVar00526589
      WBVar01214837
      WBVar00526590
      WBVar01214838
      WBVar00526591
      WBVar00526592
      WBVar01214839
      WBVar00526593
      WBVar01214840
      WBVar01214841
      WBVar00526594
      WBVar00526595
      WBVar01214842
      WBVar00526596
      WBVar01214843
      WBVar00526597
      WBVar01214844
      WBVar01214845
      WBVar01897971
      WBVar00526598
      WBVar01214846
      WBVar00526599
      WBVar01214847
      WBVar01489631
      WBVar00526600
      WBVar00300624
      WBVar00526601
      WBVar01214848
      WBVar00526602
      WBVar01214849
      WBVar01214850
      WBVar00526603
      WBVar01214851
      WBVar00526604
      WBVar01214852
      WBVar01214853
      WBVar01214854
      WBVar01214855
      WBVar01214856
      WBVar02101703
      WBVar01760695
      WBVar01760696
      WBVar01214857
      WBVar01495529
      WBVar01760697
      WBVar01214858
      WBVar02152407
      WBVar01760698
      WBVar01214859
      WBVar01214860
      WBVar01214861
      WBVar01214862
      WBVar01214863
      WBVar01214864
      WBVar01214865
      WBVar01214866
      WBVar01214867
      WBVar01214868
      WBVar01214869
      WBVar01214870
      WBVar01214871
      WBVar01214872
      WBVar01214873
      WBVar01214874
      WBVar01214875
      WBVar01214876
      WBVar02013949
      WBVar01214877
      WBVar02013950
      WBVar01573333
      WBVar01907969
      WBVar01214878
      WBVar01573334
      WBVar01573335
      WBVar01214879
      WBVar01214880
      WBVar01573336
      WBVar01214881
      WBVar01214882
      WBVar01214883
      WBVar01214884
      WBVar01214885
      WBVar01214886
      WBVar01214887
      WBVar01214888
      WBVar01214889
      WBVar01711174
      WBVar00234406
      WBVar01679799
      WBVar00244654
      WBVar01493209
      WBVar01830946
      WBVar01830947
      WBVar01911351
      WBVar01830948
      WBVar00313932
      WBVar00313933
      WBVar00313934
      WBVar01942384
      WBVar01528482
      WBVar01942385
      WBVar01946539
      WBVar01528483
      WBVar01528484
      WBVar01946540
      WBVar01946541
      WBVar01528485
      WBVar01488259
      WBVar01488260
      WBVar01946542
      WBVar01528486
      WBVar01846012
      WBVar01946543
      WBVar01528487
      WBVar01946544
      WBVar02086895
      WBVar01545153
      WBVar01545154
      WBVar01545155
      WBVar02140698
      WBVar02027782
      WBVar02140699
      WBVar02152151
      WBVar00249688
      WBVar00249689
      WBVar01928987
      WBVar01928988
      WBVar01553310
      WBVar01553311
      WBVar01928989
      WBVar01498960
      WBVar01553312
      WBVar00221887
      WBVar01553313
      WBVar01553314
      WBVar01500067
      WBVar00221889
    Strain: WBStrain00008466
    RNASeq_FPKM (74)
    GO_annotation: 00055778
      00055779
      00055780
      00055781
      00055782
      00055783
    Ortholog (21)
    Structured_description: Concise_description: psa-3 encodes a Meis-related protein; along with nob-1 and ceh-20, psa-3 is required for the proper asymmetric cell division of the T hypodermal cell; a PSA-3::GFP reporter fusino is expressed in the T hypodermal cell, head neurons, posterior gut cells, hypodermal cells (hyp7, hyp9, and hyp10), and the P blast cells; psa-3 expression is regulated by the POP-1 TCF transcription factor, as well as CEH-20/Pbx and the NOB-1 homeodomain protein; PSA-3 physically interacts with CEH-20 and regulates its nuclear localization. Paper_evidence: WBPaper00027741
          Curator_confirmed: WBPerson1843
          Date_last_updated: 15 Feb 2014 00:00:00
      Automated_description: Enables transcription coactivator binding activity. Involved in regulation of asymmetric cell division. Located in nucleus. Expressed in several structures, including TL.aa; TL.pa; TR.aa; TR.pa; and hypodermal cell. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F39D8.2a
      F39D8.2b
      F39D8.2c
      F39D8.2d
    Corresponding_CDS_history: F39D8.2:wp102
      F39D8.2:wp163
      F39D8.2a:wp246
    Corresponding_transcript: F39D8.2a.1
      F39D8.2b.1
      F39D8.2c.1
      F39D8.2d.1
    Other_sequence: Tcol_isotig16426
    Associated_feature (13)
  Experimental_info: RNAi_result: WBRNAi00083965 Inferred_automatically: RNAi_primary
      WBRNAi00046770 Inferred_automatically: RNAi_primary
      WBRNAi00023225 Inferred_automatically: RNAi_primary
      WBRNAi00023737 Inferred_automatically: RNAi_primary
      WBRNAi00014598 Inferred_automatically: RNAi_primary
      WBRNAi00031986 Inferred_automatically: RNAi_primary
      WBRNAi00024023 Inferred_automatically: RNAi_primary
      WBRNAi00023460 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr4287
      Expr9858
      Expr1017410
      Expr1034181
      Expr1150644
      Expr2015130
      Expr2033368
    Drives_construct: WBCnstr00009746
      WBCnstr00032104
    Construct_product: WBCnstr00009746
      WBCnstr00032104
    Microarray_results (26)
    Expression_cluster (112)
    Interaction (11)
    WBProcess: WBbiopr:00000073
  Map_info: Map: X Position: 22.5924 Error: 0.030916
    Positive: Positive_clone: F39D8 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5395
        5655
    Pseudo_map_position
  Reference (6)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene