WormBase Tree Display for Gene: WBGene00006407

WBGene00006407 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: CHROMOSOME_I
  Identity: Version: 4
    Name: CGC_name: lim-9 Person_evidence: WBPerson54
            WBPerson505
            WBPerson545
      Sequence_name: F25H5.1
      Molecular_name (24)
      Other_name (2)
      Public_name: lim-9
    DB_info: Database: AceView gene 1J758
        WormQTL gene WBGene00006407
        WormFlux gene WBGene00006407
        NDB locus_tag CELE_F25H5.1
        Panther gene CAEEL|WormBase=F25H5.1i|UniProtKB=A0A0K3AQM0
          family PTHR24205
        NCBI gene 3565712
        RefSeq protein NM_001377616.3
            NM_001026238.6
            NM_001377617.3
            NM_001026237.7
            NM_001313465.3
            NM_001313491.3
            NM_001030057.5
            NM_001313466.5
        TREEFAM TREEFAM_ID TF321684
        TrEMBL UniProtAcc G5EDJ5
            A0A0K3AQM0
            Q3S1I9
            A0A0K3AQP4
            O17833
            G5EEA4
            A0A0K3ATK8
            G5EF39
        UniProt_GCRP UniProtAcc A0A0K3AQM0
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:40 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 02 Feb 2007 10:20:45 WBPerson2970 Name_change: CGC_name: lim-9
                Other_name: tag-15
        3 10 Jun 2014 12:12:12 WBPerson1983 Event: Acquires_merge: WBGene00008108
        4 13 Nov 2014 15:02:41 WBPerson4025 Event: Acquires_merge: WBGene00008109
      Acquires_merge: WBGene00008108
        WBGene00008109
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lim
    Allele: WBVar02147469
      WBVar00659473
      WBVar00659474
      WBVar00659475
      WBVar00538318
      WBVar00659476
      WBVar00538329
      WBVar00659477
      WBVar00659478
      WBVar00659479
      WBVar00659480
      WBVar00659481
      WBVar00659482
      WBVar00659483
      WBVar00659484
      WBVar00659485
      WBVar01491799
      WBVar00659486
      WBVar00659487
      WBVar00659488
      WBVar00659489
      WBVar00659490
      WBVar01489965
      WBVar00659491
      WBVar00659492
      WBVar00659493
      WBVar01694840
      WBVar00659494
      WBVar00659495
      WBVar00659496
      WBVar00659497
      WBVar00659498
      WBVar00260226
      WBVar00659499
      WBVar00155612
      WBVar00659500
      WBVar00155613
      WBVar01493287
      WBVar00155614
      WBVar00659501
      WBVar00155615
      WBVar00659502
      WBVar00155616
      WBVar00659503
      WBVar00243653
      WBVar00659504
      WBVar00155617
      WBVar00155618
      WBVar00659505
      WBVar01341946
      WBVar00659506
      WBVar00155619
      WBVar01341957
      WBVar00659507
      WBVar00155620
      WBVar00155621
      WBVar00659508
      WBVar00155622
      WBVar00659509
      WBVar00155623
      WBVar01341968
      WBVar01500105
      WBVar00659510
      WBVar01341979
      WBVar00155624
      WBVar00659511
      WBVar01499739
      WBVar00155625
      WBVar01341990
      WBVar00659512
      WBVar00155626
      WBVar00659513
      WBVar00659514
      WBVar01342001
      WBVar00155627
      WBVar00659515
      WBVar00257851
      WBVar00155628
      WBVar00659516
      WBVar01342012
      WBVar00155629
      WBVar01894795
      WBVar00155630
      WBVar00659517
      WBVar00155631
      WBVar00659518
      WBVar00155632
      WBVar00659519
      WBVar00659520
      WBVar00155633
      WBVar00659521
      WBVar02016358
      WBVar00155634
      WBVar00155635
      WBVar00659522
      WBVar00155636
      WBVar00659523
      WBVar01831226
      WBVar00659524
      WBVar00155637
      WBVar00659525
      WBVar00155638
      WBVar00659526
      WBVar00155639
      WBVar00341498
      WBVar00659527
      WBVar00155640
      WBVar00341499
      WBVar00659528
      WBVar00155641
      WBVar02151110
      WBVar00341500
      WBVar00155642
      WBVar00659529
      WBVar00341501
      WBVar00155643
      WBVar00659530
      WBVar00659531
      WBVar00341502
      WBVar00155644
      WBVar00659532
      WBVar00341503
      WBVar00155645
      WBVar00155646
      WBVar00659533
      WBVar01391973
      WBVar00341504
      WBVar00659534
      WBVar00341505
      WBVar00155647
      WBVar00659535
      WBVar00155648
      WBVar00341506
      WBVar00341507
      WBVar00155649
      WBVar00659536
      WBVar00341508
      WBVar00155650
      WBVar00659537
      WBVar00659538
      WBVar00341509
      WBVar00155651
      WBVar00659539
      WBVar00341510
      WBVar00155652
      WBVar00155653
      WBVar00659540
      WBVar00299399
      WBVar00341511
      WBVar00155654
      WBVar00299400
      WBVar00145513
      WBVar00253642
      WBVar00341512
      WBVar00659541
      WBVar00341513
      WBVar00659542
      WBVar00659543
      WBVar00341514
      WBVar00659544
      WBVar00341515
      WBVar00341516
      WBVar00659545
      WBVar00341517
      WBVar00659546
      WBVar00659547
      WBVar00341518
      WBVar00341519
      WBVar00659548
      WBVar00341520
      WBVar00659549
      WBVar00659550
      WBVar00341521
      WBVar00341522
      WBVar00659551
      WBVar01712996
      WBVar00341523
      WBVar00659552
      WBVar00659553
      WBVar00341524
      WBVar01712997
      WBVar00659554
      WBVar00341525
      WBVar00659555
      WBVar00341526
      WBVar00341527
      WBVar00659556
      WBVar00659557
      WBVar00341528
      WBVar00659558
      WBVar01911847
      WBVar00341529
      WBVar00659559
      WBVar00341530
      WBVar01499786
      WBVar00341531
      WBVar00659560
      WBVar00659561
      WBVar00341532
      WBVar00659562
      WBVar00341533
      WBVar01801366
      WBVar00659563
      WBVar00341534
      WBVar01499054
      WBVar00659564
      WBVar00341535
      WBVar00341536
      WBVar00659565
      WBVar00341537
      WBVar00659566
      WBVar00659567
      WBVar00341538
      WBVar00659568
      WBVar00341539
      WBVar00659569
      WBVar01493907
      WBVar00341540
      WBVar00341541
      WBVar00659570
      WBVar00341542
      WBVar00264531
      WBVar00659571
      WBVar00659572
      WBVar00341543
      WBVar00341544
      WBVar00659573
      WBVar00659574
      WBVar00341545
      WBVar00659575
      WBVar00341546
      WBVar00341547
      WBVar00659576
      WBVar00341548
      WBVar00659577
      WBVar00296921
      WBVar01432466
      WBVar00659578
      WBVar00341549
      WBVar01432470
      WBVar00341550
      WBVar00659579
      WBVar00341551
      WBVar01432472
      WBVar00659580
      WBVar01283630
      WBVar01432474
      WBVar00659581
      WBVar00341552
      WBVar01283631
      WBVar00659582
      WBVar01432480
      WBVar00341553
      WBVar02088688
      WBVar00341554
      WBVar01432482
      WBVar01283632
      WBVar00659583
      WBVar00659584
      WBVar00341555
      WBVar01432483
      WBVar00341556
      WBVar00659585
      WBVar01432484
      WBVar02072953
      WBVar00341557
      WBVar02001716
      WBVar00659586
      WBVar00341558
      WBVar00659587
      WBVar02072954
      WBVar00341559
      WBVar01475894
      WBVar01910031
      WBVar00659588
      WBVar02072955
      WBVar01475895
      WBVar00341560
      WBVar01910032
      WBVar00659589
      WBVar02072956
      WBVar01910033
      WBVar00659590
      WBVar00341561
      WBVar01475896
      WBVar01957466
      WBVar02072957
      WBVar01910034
      WBVar01957474
      WBVar00659591
      WBVar00341562
      WBVar02072958
      WBVar01475897
      WBVar00659592
      WBVar00341563
      WBVar00659593
      WBVar00341564
      WBVar00659594
      WBVar00341565
      WBVar00341566
      WBVar00298005
      WBVar00659595
      WBVar00659596
      WBVar00341567
      WBVar02039736
      WBVar02028482
      WBVar00659597
      WBVar00341568
      WBVar00659598
      WBVar00341569
      WBVar00659599
      WBVar00341570
      WBVar00659600
      WBVar00341571
      WBVar00659601
      WBVar00659602
      WBVar00659603
      WBVar00659604
      WBVar01421867
      WBVar00659605
      WBVar00659606
      WBVar01421878
      WBVar00659607
      WBVar00659423
      WBVar00659608
      WBVar00659424
      WBVar00659609
      WBVar00659425
      WBVar01421889
      WBVar00659610
      WBVar00659426
      WBVar00659611
      WBVar00659427
      WBVar00659612
      WBVar00659613
      WBVar00659428
      WBVar00659614
      WBVar00659429
      WBVar00659615
      WBVar00659430
      WBVar00265311
      WBVar00659431
      WBVar01421900
      WBVar00659616
      WBVar00659617
      WBVar00659432
      WBVar00659618
      WBVar00659433
      WBVar00659434
      WBVar00659619
      WBVar00659620
      WBVar00659435
      WBVar00659621
      WBVar00659436
      WBVar00659622
      WBVar00659437
      WBVar00659438
      WBVar00659623
      WBVar00659439
      WBVar00659624
      WBVar00659440
      WBVar00659625
      WBVar00659626
      WBVar00659442
      WBVar00659443
      WBVar00659627
      WBVar00659444
      WBVar00659628
      WBVar00659445
      WBVar00659629
      WBVar00263301
      WBVar00659446
      WBVar00659630
      WBVar00659631
      WBVar00659447
      WBVar00659632
      WBVar00659448
      WBVar00659449
      WBVar00659633
      WBVar00659450
      WBVar00659634
      WBVar00659451
      WBVar00659635
      WBVar00659636
      WBVar00659452
      WBVar00659637
      WBVar00659453
      WBVar00659638
      WBVar00659454
      WBVar00659639
      WBVar00659455
      WBVar00659640
      WBVar00659456
      WBVar00659457
      WBVar00659641
      WBVar00659458
      WBVar00659642
      WBVar01422623
      WBVar00659459
      WBVar00659643
      WBVar00145617
      WBVar01422624
      WBVar00659644
      WBVar00659460
      WBVar00659461
      WBVar00659645
      WBVar00659462
      WBVar00659646
      WBVar00659463
      WBVar02128144
      WBVar00659647
      WBVar00659648
      WBVar02128145
      WBVar00659464
      WBVar02128146
      WBVar00659649
      WBVar00659465
      WBVar02128147
      WBVar00659650
      WBVar00659466
      WBVar02128148
      WBVar00659467
      WBVar00659651
      WBVar01820983
      WBVar01498959
      WBVar02128149
      WBVar00659468
      WBVar02128150
      WBVar00659469
      WBVar00659470
      WBVar00659471
      WBVar00659472
    Strain: WBStrain00035585
      WBStrain00035699
    In_cluster: conserved_miRNA_siRNA_cluster
    RNASeq_FPKM (74)
    GO_annotation: 00000569
      00000570
      00000571
      00000572
      00000573
      00014123
      00014124
      00014125
      00014126
      00114034
    Ortholog (55)
    Structured_description: Concise_description: lim-9 encodes a protein containing one PET domain and six LIM domains and is orthologous to Drosophila LIMPET and vertebrate FHL2; in vitro binding and yeast two-hybrid assays indicate that LIM-9 physically interacts with UNC-96 and UNC-97 and thus, is likely a component of a protein complex that links muscle focal adhesions to thick filaments; LIM-9 also enables Wnt-directed planar cell polarity and is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak; a lim-9::gfp promoter fusion is expressed in pharyngeal and body wall muscles, as well as in some neuronal processes, vulva, spermathecae, anal sphincter and depressor muscles, gonadal sheath, and the excretory canal; staining with LIM-9 antibodies reveals that in body wall muscle LIM-9 localizes, at least partially, to M-lines, around which myosin thick filaments are organized. Paper_evidence: WBPaper00027345
            WBPaper00030924
          Curator_confirmed: WBPerson1843
            WBPerson567
          Date_last_updated: 27 Feb 2009 00:00:00
      Automated_description: Enables protein domain specific binding activity. Predicted to be involved in regulation of DNA-templated transcription. Located in M band. Expressed in several structures, including body wall musculature; excretory canal; non-striated muscle; spermatheca; and vulva. Is an ortholog of human FHL2 (four and a half LIM domains 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F25H5.1b
      F25H5.1c
      F25H5.1d
      F25H5.1e
      F25H5.1f
      F25H5.1g
      F25H5.1h
      F25H5.1i
    Corresponding_CDS_history: F25H5.1a:wp136
      F25H5.1a:wp275
      F25H5.1b:wp136
      F25H5.1b:wp246
      F25H5.1c:wp246
      F25H5.1d:wp246
      F25H5.1f:wp183
    Corresponding_transcript: F25H5.1b.1
      F25H5.1c.1
      F25H5.1d.1
      F25H5.1e.1
      F25H5.1f.1
      F25H5.1g.1
      F25H5.1h.1
      F25H5.1i.1
    Other_sequence (62)
    Associated_feature (44)
    Transcription_factor: WBTranscriptionFactor000581
  Experimental_info: RNAi_result (14)
    Expr_pattern: Expr8313
      Expr8316
      Expr8552
      Expr1025302
      Expr1029193
      Expr1032599
      Expr1146521
      Expr1149460
      Expr2013155
      Expr2031387
    Drives_construct: WBCnstr00013257
    Antibody: WBAntibody00001285
    Microarray_results (81)
    Expression_cluster (241)
    Interaction (40)
  Map_info: Map: I Position: 3.6557 Error: 0.004609
    Positive: Positive_clone: F25H5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (13)
  Remark: Gene name created from parsing 'genotype' field from CGC strain information CGC_data_submission
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag.
  Method: Gene