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WormBase Tree Display for Variation: WBVar00243653

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Name Class

WBVar00243653EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00243653
Other_namesnp_C45G3[1]
cewivar00625947
F25H5.1i.1:c.931+184T>A
F25H5.1f.1:c.520+184T>A
F25H5.1c.1:c.244+184T>A
F25H5.1h.1:c.841+184T>A
F25H5.1b.1:c.409+184T>A
HGVSgCHROMOSOME_I:g.9194843A>T
Sequence_detailsSMapS_parentSequenceC45G3
Flanking_sequencestgaaaatttaaaaatgtttttttttaaataatttttgattgttcaaagtg
Mapping_targetC45G3
Type_of_mutationSubstitutionAT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WBStrain00027652From_analysisMillion_mutation_project_reanalysis
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00006407
TranscriptF25H5.1c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF25H5.1c.1:c.244+184T>A
Intron_number2/12
F25H5.1b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF25H5.1b.1:c.409+184T>A
Intron_number3/13
F25H5.1i.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF25H5.1i.1:c.931+184T>A
Intron_number8/18
F25H5.1h.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF25H5.1h.1:c.841+184T>A
Intron_number7/17
F25H5.1f.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF25H5.1f.1:c.520+184T>A
Intron_number5/15
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.9407 VarS=AT
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_C45G3.1
[20040130 db] this Allele was previously named snp_C45G3.1
[20090224 db] original Wicks name : C45G3:1274..2257@105 Psnp=0.9407 VarS=AT
[20090224 db] original Wicks id : eam47b10.s1@31,t,53
MethodSNP_Wicks