WormBase Tree Display for Variation: WBVar00243653
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WBVar00243653 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00243653 | |||
Other_name | snp_C45G3[1] | ||||
cewivar00625947 | |||||
F25H5.1i.1:c.931+184T>A | |||||
F25H5.1f.1:c.520+184T>A | |||||
F25H5.1c.1:c.244+184T>A | |||||
F25H5.1h.1:c.841+184T>A | |||||
F25H5.1b.1:c.409+184T>A | |||||
HGVSg | CHROMOSOME_I:g.9194843A>T | ||||
Sequence_details | SMap | S_parent | Sequence | C45G3 | |
Flanking_sequences | tgaaaatttaaaaatgttttttttt | aaataatttttgattgttcaaagtg | |||
Mapping_target | C45G3 | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00006407 | |||
Transcript | F25H5.1c.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F25H5.1c.1:c.244+184T>A | ||||
Intron_number | 2/12 | ||||
F25H5.1b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F25H5.1b.1:c.409+184T>A | ||||
Intron_number | 3/13 | ||||
F25H5.1i.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F25H5.1i.1:c.931+184T>A | ||||
Intron_number | 8/18 | ||||
F25H5.1h.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F25H5.1h.1:c.841+184T>A | ||||
Intron_number | 7/17 | ||||
F25H5.1f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F25H5.1f.1:c.520+184T>A | ||||
Intron_number | 5/15 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9407 VarS=AT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_C45G3.1 | |||||
[20040130 db] this Allele was previously named snp_C45G3.1 | |||||
[20090224 db] original Wicks name : C45G3:1274..2257@105 Psnp=0.9407 VarS=AT | |||||
[20090224 db] original Wicks id : eam47b10.s1@31,t,53 | |||||
Method | SNP_Wicks |