WormBase Tree Display for Gene: WBGene00006407
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| WBGene00006407 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_I | ||||||
| Identity | Version | 4 | |||||||
| Name | CGC_name | lim-9 | Person_evidence | WBPerson54 | |||||
| WBPerson505 | |||||||||
| WBPerson545 | |||||||||
| Sequence_name | F25H5.1 | ||||||||
| Molecular_name (24) | |||||||||
| Other_name | tag-15 | Person_evidence | WBPerson102 | ||||||
| CELE_F25H5.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | lim-9 | ||||||||
| DB_info | Database | AceView | gene | 1J758 | |||||
| WormQTL | gene | WBGene00006407 | |||||||
| WormFlux | gene | WBGene00006407 | |||||||
| NDB | locus_tag | CELE_F25H5.1 | |||||||
| Panther | gene | CAEEL|WormBase=F25H5.1i|UniProtKB=A0A0K3AQM0 | |||||||
| family | PTHR24205 | ||||||||
| NCBI | gene | 3565712 | |||||||
| RefSeq | protein | NM_001377616.3 | |||||||
| NM_001026238.6 | |||||||||
| NM_001377617.3 | |||||||||
| NM_001026237.7 | |||||||||
| NM_001313465.3 | |||||||||
| NM_001313491.3 | |||||||||
| NM_001030057.5 | |||||||||
| NM_001313466.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF321684 | |||||||
| TrEMBL | UniProtAcc | G5EDJ5 | |||||||
| A0A0K3AQM0 | |||||||||
| Q3S1I9 | |||||||||
| A0A0K3AQP4 | |||||||||
| O17833 | |||||||||
| G5EEA4 | |||||||||
| A0A0K3ATK8 | |||||||||
| G5EF39 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A0K3AQM0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 02 Feb 2007 10:20:45 | WBPerson2970 | Name_change | CGC_name | lim-9 | ||||
| Other_name | tag-15 | ||||||||
| 3 | 10 Jun 2014 12:12:12 | WBPerson1983 | Event | Acquires_merge | WBGene00008108 | ||||
| 4 | 13 Nov 2014 15:02:41 | WBPerson4025 | Event | Acquires_merge | WBGene00008109 | ||||
| Acquires_merge | WBGene00008108 | ||||||||
| WBGene00008109 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lim | ||||||||
| Allele (432) | |||||||||
| Strain | WBStrain00035585 | ||||||||
| WBStrain00035699 | |||||||||
| In_cluster | conserved_miRNA_siRNA_cluster | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00000569 | ||||||||
| 00000570 | |||||||||
| 00000571 | |||||||||
| 00000572 | |||||||||
| 00000573 | |||||||||
| 00014123 | |||||||||
| 00014124 | |||||||||
| 00014125 | |||||||||
| 00014126 | |||||||||
| 00114034 | |||||||||
| Ortholog (55) | |||||||||
| Structured_description | Concise_description | lim-9 encodes a protein containing one PET domain and six LIM domains and is orthologous to Drosophila LIMPET and vertebrate FHL2; in vitro binding and yeast two-hybrid assays indicate that LIM-9 physically interacts with UNC-96 and UNC-97 and thus, is likely a component of a protein complex that links muscle focal adhesions to thick filaments; LIM-9 also enables Wnt-directed planar cell polarity and is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak; a lim-9::gfp promoter fusion is expressed in pharyngeal and body wall muscles, as well as in some neuronal processes, vulva, spermathecae, anal sphincter and depressor muscles, gonadal sheath, and the excretory canal; staining with LIM-9 antibodies reveals that in body wall muscle LIM-9 localizes, at least partially, to M-lines, around which myosin thick filaments are organized. | Paper_evidence | WBPaper00027345 | |||||
| WBPaper00030924 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 27 Feb 2009 00:00:00 | ||||||||
| Automated_description | Enables protein domain specific binding activity. Predicted to be involved in regulation of DNA-templated transcription. Located in M band. Expressed in several structures, including body wall musculature; excretory canal; non-striated muscle; spermatheca; and vulva. Is an ortholog of human FHL2 (four and a half LIM domains 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F25H5.1b | |||||||
| F25H5.1c | |||||||||
| F25H5.1d | |||||||||
| F25H5.1e | |||||||||
| F25H5.1f | |||||||||
| F25H5.1g | |||||||||
| F25H5.1h | |||||||||
| F25H5.1i | |||||||||
| Corresponding_CDS_history | F25H5.1a:wp136 | ||||||||
| F25H5.1a:wp275 | |||||||||
| F25H5.1b:wp136 | |||||||||
| F25H5.1b:wp246 | |||||||||
| F25H5.1c:wp246 | |||||||||
| F25H5.1d:wp246 | |||||||||
| F25H5.1f:wp183 | |||||||||
| Corresponding_transcript | F25H5.1b.1 | ||||||||
| F25H5.1c.1 | |||||||||
| F25H5.1d.1 | |||||||||
| F25H5.1e.1 | |||||||||
| F25H5.1f.1 | |||||||||
| F25H5.1g.1 | |||||||||
| F25H5.1h.1 | |||||||||
| F25H5.1i.1 | |||||||||
| Other_sequence (62) | |||||||||
| Associated_feature (44) | |||||||||
| Transcription_factor | WBTranscriptionFactor000581 | ||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr8313 | ||||||||
| Expr8316 | |||||||||
| Expr8552 | |||||||||
| Expr1025302 | |||||||||
| Expr1029193 | |||||||||
| Expr1032599 | |||||||||
| Expr1146521 | |||||||||
| Expr1149460 | |||||||||
| Expr2013155 | |||||||||
| Expr2031387 | |||||||||
| Drives_construct | WBCnstr00013257 | ||||||||
| Antibody | WBAntibody00001285 | ||||||||
| Microarray_results (81) | |||||||||
| Expression_cluster (241) | |||||||||
| Interaction (40) | |||||||||
| Map_info | Map | I | Position | 3.6557 | Error | 0.004609 | |||
| Positive | Positive_clone | F25H5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | |||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag. | |||||||||
| Method | Gene |
