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WormBase Tree Display for Gene: WBGene00003969

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Name Class

WBGene00003969SMapS_parentSequenceF23H11
IdentityVersion1
NameCGC_namepef-1
Sequence_nameF23H11.8
Molecular_nameF23H11.8a
F23H11.8a.1
CE27999
F23H11.8b
CE30662
F23H11.8c
CE43732
F23H11.8b.1
F23H11.8b.2
F23H11.8c.1
Other_nameCELE_F23H11.8Accession_evidenceNDBBX284603
Public_namepef-1
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:33WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpef
AlleleWBVar01395686
WBVar00388916
WBVar00032578
WBVar00388917
WBVar01395687
WBVar00388918
WBVar00032583
WBVar00388919
WBVar00388920
WBVar01255367
WBVar00388921
WBVar00388922
WBVar00032588
WBVar01443385
WBVar01255370
WBVar02124101
WBVar00388923
WBVar01255372
WBVar01443386
WBVar00388924
WBVar01255373
WBVar01443387
WBVar00388925
WBVar01443389
WBVar00032593
WBVar00388926
WBVar01443390
WBVar01255376
WBVar00388927
WBVar01255377
WBVar01443391
WBVar00032598
WBVar01255378
WBVar01900696
WBVar01443392
WBVar01443393
WBVar01255379
WBVar01255380
WBVar01500082
WBVar01255381
WBVar00559488
WBVar00032603
WBVar00559490
WBVar01255383
WBVar00559492
WBVar01255384
WBVar00032608
WBVar01917839
WBVar02123377
WBVar01255386
WBVar01255388
WBVar01255389
WBVar00032613
WBVar01255390
WBVar01255391
WBVar00032618
WBVar00007676
WBVar01255392
WBVar01255393
WBVar01255394
WBVar01255395
WBVar00007681
WBVar00032623
WBVar01255398
WBVar00032628
WBVar01255399
WBVar00007686
WBVar01255402
WBVar01322724
WBVar01255403
WBVar01322727
WBVar00007691
WBVar01322729
WBVar00032633
WBVar01255404
WBVar01255406
WBVar02123578
WBVar00095508
WBVar01499552
WBVar00007696
WBVar01255408
WBVar01255409
WBVar00095509
WBVar00095510
WBVar01255410
WBVar00032643
WBVar00095511
WBVar00007701
WBVar02121742
WBVar00095512
WBVar00007706
WBVar01506202
WBVar01506203
WBVar01506204
WBVar02122116
WBVar00007711
WBVar01506205
WBVar02153689
WBVar01506206
WBVar01506207
WBVar00007716
WBVar01506208
WBVar01506209
WBVar01506210
WBVar00007721
WBVar01506211
WBVar01498832
WBVar01506212
WBVar01506213
WBVar00249750
WBVar01506214
WBVar00007726
WBVar00800277
WBVar00800278
WBVar01400945
WBVar00800279
WBVar00007731
WBVar00800280
WBVar00800281
WBVar00007736
WBVar02120474
WBVar00800282
WBVar00800283
WBVar00800284
WBVar00007741
WBVar00800285
WBVar00800286
WBVar02124343
WBVar01400956
WBVar00800287
WBVar00007746
WBVar00800288
WBVar01564542
WBVar00800289
WBVar00800290
WBVar01564543
WBVar00800291
WBVar01564544
WBVar02121404
WBVar00007751
WBVar01564545
WBVar00800292
WBVar00800293
WBVar01400967
WBVar01564546
WBVar00800294
WBVar00007756
WBVar01564547
WBVar01564548
WBVar00800295
WBVar01564549
WBVar02075898
WBVar01769412
WBVar00800296
WBVar01564550
WBVar00007761
WBVar01769413
WBVar00800297
WBVar00800298
WBVar01564551
WBVar01769414
WBVar00800299
WBVar01564552
WBVar01769415
WBVar01769416
WBVar01564553
WBVar00007766
WBVar01400978
WBVar00800300
WBVar00261200
WBVar00800301
WBVar01769417
WBVar01564554
WBVar01769418
WBVar01564555
WBVar00800302
WBVar01769419
WBVar01564556
WBVar00007771
WBVar00800303
WBVar00800304
WBVar01564557
WBVar01769420
WBVar00800305
WBVar01564558
WBVar01769421
WBVar01564559
WBVar00800306
WBVar00007776
WBVar01769422
WBVar01769423
WBVar01564560
WBVar00800307
WBVar00800308
WBVar01769424
WBVar02121974
WBVar01983515
WBVar00007781
WBVar00800309
WBVar01769425
WBVar00800310
WBVar01769426
WBVar01983516
WBVar01769427
WBVar00800311
WBVar00800312
WBVar01769428
WBVar00800313
WBVar01769429
WBVar00800314
WBVar01769430
WBVar00800315
WBVar01769431
WBVar01769432
WBVar00800316
WBVar01769433
WBVar01769434
WBVar00258101
WBVar01961617
WBVar01407360
WBVar01961618
WBVar01407361
WBVar01961620
WBVar01407362
WBVar01407363
WBVar02012666
WBVar02018507
WBVar02124401
WBVar01951278
WBVar02030204
WBVar02030205
WBVar02123672
WBVar02131426
WBVar02131427
WBVar01492288
WBVar01500205
WBVar00093173
WBVar01389821
WBVar01389836
WBVar01389839
WBVar01389843
WBVar02121865
WBVar00032543
WBVar00032548
WBVar00269512
WBVar02080280
WBVar00032553
WBVar01479076
WBVar01479077
WBVar00032558
WBVar01401114
WBVar00032563
WBVar00032568
WBVar01606466
WBVar01606467
WBVar01606468
WBVar00032573
WBVar01606469
WBVar00388913
WBVar01395683
WBVar01395684
WBVar02100168
WBVar00388914
WBVar00388915
WBVar01395685
StrainWBStrain00032302
WBStrain00047611
RNASeq_FPKM (74)
GO_annotation (24)
Contained_in_operonCEOP3805
Ortholog (42)
Paralog (44)
Structured_descriptionConcise_descriptionpef-1 encodes an ortholog of the rhodopsin-specific serine/threonine phosphatase RdgC in D. melanogaster and of RdgC-related proteins in humans (PPEF1 and PPEF2; OMIM:300109 and OMIM:602256); PEF-1 has a EF-hand calcium-binding domain, and is peripherally bound to the plasma membrane by myristoylation and palmitoylation; pef-1 has no known mutant phenotype, but is expressed in several anterior amphid neurons, from what appears to be the 3-fold embryo stage onward; on the basis of its expression and its orthology, PEF-1 may negatively regulate signalling through serpentine receptors such as STR-2.Paper_evidenceWBPaper00004766
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in detection of stimulus involved in sensory perception. Located in neuronal cell body. Expressed in hypodermis; intestinal cell; muscle cell; and neurons. Is an ortholog of human PPEF1 (protein phosphatase with EF-hand domain 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_info (4)
Experimental_infoRNAi_resultWBRNAi00045447Inferred_automaticallyRNAi_primary
WBRNAi00006514Inferred_automaticallyRNAi_primary
WBRNAi00115957Inferred_automaticallyRNAi_primary
WBRNAi00013834Inferred_automaticallyRNAi_primary
Expr_patternExpr1500
Expr2115
Expr1020293
Expr1031893
Expr1149366
Expr2014817
Expr2033051
Drives_constructWBCnstr00010314
WBCnstr00035766
Construct_productWBCnstr00035766
AntibodyWBAntibody00000387
Microarray_results (25)
Expression_cluster (146)
Interaction (17)
Map_infoMapIIIPosition-25.0941Error0.017637
PositivePositive_cloneF23H11Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point5654
Pseudo_map_position
ReferenceWBPaper00004766
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene