WormBase Tree Display for Gene: WBGene00010436
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WBGene00010436 | SMap | S_parent | Sequence | JC8 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | JC8.4 | |||||||
Molecular_name | JC8.4 | ||||||||
JC8.4.1 | |||||||||
CE17987 | |||||||||
Other_name | CELE_JC8.4 | Accession_evidence | NDB | BX284604 | |||||
Public_name | JC8.4 | ||||||||
DB_info | Database | AceView | gene | 4O9 | |||||
WormQTL | gene | WBGene00010436 | |||||||
WormFlux | gene | WBGene00010436 | |||||||
NDB | locus_tag | CELE_JC8.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00010436|UniProtKB=Q95QD6 | |||||||
family | PTHR11079 | ||||||||
NCBI | gene | 178281 | |||||||
RefSeq | protein | NM_070145.3 | |||||||
TREEFAM | TREEFAM_ID | TF313782 | |||||||
TrEMBL | UniProtAcc | Q95QD6 | |||||||
UniProt_GCRP | UniProtAcc | Q95QD6 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele | WBVar00439341 | ||||||||
WBVar02146663 | |||||||||
WBVar00953071 | |||||||||
WBVar00953072 | |||||||||
WBVar00953073 | |||||||||
WBVar01498996 | |||||||||
WBVar01499925 | |||||||||
WBVar01499951 | |||||||||
WBVar01499952 | |||||||||
WBVar01499492 | |||||||||
WBVar01499493 | |||||||||
WBVar01500245 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00088351 | ||||||||
00088352 | |||||||||
00088353 | |||||||||
00117854 | |||||||||
Contained_in_operon | CEOP4536 | ||||||||
Ortholog (36) | |||||||||
Paralog | WBGene00012968 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
WormBase-Compara | |||||||||
WBGene00020052 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00007440 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00012927 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00015574 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00016495 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00020747 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | JC8.4 encodes a cytosine deaminase orthologous to Saccharomyces cerevisiae Tad2p, a deaminase that lies, evolutionarily, between cytidine and adenosine deaminases and deaminates adenosine residues in the anticodon of specific yeast tRNAs; loss of JC8.4 activity via RNAi has been reported to result in partially penetrant embryonic lethality. | Paper_evidence | WBPaper00024352 | |||||
WBPaper00024925 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 25 Feb 2009 00:00:00 | ||||||||
Automated_description | Predicted to enable tRNA-specific adenosine-34 deaminase activity. Predicted to be involved in tRNA wobble adenosine to inosine editing. Is an ortholog of human ADAT2 (adenosine deaminase tRNA specific 2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | JC8.4 | |||||||
Corresponding_transcript | JC8.4.1 | ||||||||
Other_sequence | EX912305.1 | ||||||||
HCC08138_1 | |||||||||
Hbac_isotig05708 | |||||||||
HBC22465_1 | |||||||||
PEC00255_1 | |||||||||
PE00010 | |||||||||
PP00894 | |||||||||
MCC01743_1 | |||||||||
MC00733 | |||||||||
PE00060 | |||||||||
JI211927.1 | |||||||||
HC07484 | |||||||||
JK315783.1 | |||||||||
PPC04856_1 | |||||||||
CBC12588_1 | |||||||||
Dviv_isotig22104 | |||||||||
Experimental_info | RNAi_result | WBRNAi00033793 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00049572 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00016357 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061636 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1014000 | ||||||||
Expr1034552 | |||||||||
Expr1153299 | |||||||||
Expr2004625 | |||||||||
Expr2022851 | |||||||||
Drives_construct | WBCnstr00031418 | ||||||||
Construct_product | WBCnstr00031418 | ||||||||
Microarray_results (15) | |||||||||
Expression_cluster (101) | |||||||||
SAGE_tag | SAGE:ctgagatggt | Strand | Sense | ||||||
Unambiguously_mapped | |||||||||
SAGE:ccttgtcgga | Strand | Antisense | |||||||
SAGE:ctgaaaacattctacga | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:ctgaaaacat | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:gcgacagatc | Strand | Antisense | |||||||
Interaction (18) | |||||||||
Map_info | Positive | Positive_clone | JC8 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | IV | 8.48522 | |||||||
Reference | WBPaper00024352 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Method | Gene |