WormBase Tree Display for Gene: WBGene00017892

WBGene00017892 SMap: S_parent: Sequence: F28B4
  Identity: Version: 1
    Name: Sequence_name: F28B4.3
      Molecular_name: F28B4.3
        F28B4.3.1
        CE07153
      Other_name: CELE_F28B4.3 Accession_evidence: NDB BX284606
      Public_name: F28B4.3
    DB_info: Database: AceView gene XD846
        WormQTL gene WBGene00017892
        WormFlux gene WBGene00017892
        NDB locus_tag CELE_F28B4.3
        Panther gene CAEEL|WormBase=WBGene00017892|UniProtKB=Q19853
          family PTHR47324
        NCBI gene 180612
        RefSeq protein NM_001380930.3
        TREEFAM TREEFAM_ID TF320379
        TrEMBL UniProtAcc Q19853
        UniProt_GCRP UniProtAcc Q19853
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:59 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar00498589
      WBVar00498590
      WBVar00498591
      WBVar00498592
      WBVar00498593
      WBVar00498594
      WBVar00498595
      WBVar00498596
      WBVar00498597
      WBVar00498598
      WBVar01486653
      WBVar00498599
      WBVar00498600
      WBVar00498601
      WBVar00498602
      WBVar00498603
      WBVar00498604
      WBVar00498605
      WBVar00498606
      WBVar00498607
      WBVar01570889
      WBVar01497354
      WBVar01601346
      WBVar01468219
      WBVar01468220
      WBVar01468221
      WBVar00258072
      WBVar01757959
      WBVar01757960
      WBVar01757961
      WBVar00308449
      WBVar01499636
      WBVar01132352
      WBVar01132353
      WBVar01132354
      WBVar01132355
      WBVar01132356
      WBVar01132357
      WBVar00276441
      WBVar01132358
      WBVar01132359
      WBVar01132360
      WBVar01132361
      WBVar01132362
      WBVar01132363
      WBVar01132364
      WBVar01132365
      WBVar01132366
      WBVar01132367
      WBVar01132368
      WBVar01132369
      WBVar01132370
      WBVar01132371
      WBVar01132372
      WBVar01132373
      WBVar01132374
      WBVar01132375
      WBVar01499297
      WBVar01132376
      WBVar01132377
      WBVar01132378
      WBVar01132379
      WBVar01619521
      WBVar01132380
      WBVar01490285
      WBVar01132381
      WBVar01132382
      WBVar01132383
      WBVar01132384
      WBVar01822435
      WBVar01132385
      WBVar01132386
      WBVar01132387
      WBVar01132388
      WBVar01132389
      WBVar01132390
      WBVar01132391
      WBVar01132392
      WBVar01132393
      WBVar01132394
      WBVar01132395
      WBVar01132396
      WBVar01132397
      WBVar01132398
      WBVar01132399
      WBVar01132400
      WBVar01132401
    RNASeq_FPKM (74)
    Ortholog (31)
    Paralog: WBGene00007340 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00012018 Caenorhabditis elegans From_analysis: Panther
      WBGene00018237 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00022858 Caenorhabditis elegans From_analysis: Panther
      WBGene00021233 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00019957 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00006498 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in AFD; PLM; RMED; intestine; and pharyngeal muscle cell based on tiling array; RNA-seq; single-cell RNA-seq; and proteomic studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; proteomic; and RNA-seq studies. Is affected by twenty-three chemicals including rotenone; manganese chloride; and mianserin based on RNA-seq; microarray; and proteomic studies. Is predicted to encode a protein with the following domains: von Willebrand factor, type A; C-type lectin fold; von Willebrand factor type A domain; von Willebrand factor A-like domain superfamily; C-type lectin-like/link domain superfamily; Lectin C-type domain; EGF-like domain; Phosphorylation site; MD domain; and C-type lectin-like. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F28B4.3
    Corresponding_transcript: F28B4.3.1
    Other_sequence: CR08180
      CSC00458_1
      CR05396
      CJC18212_1
      CR08402
      CRC10450_1
      Tcol_isotig10776
      FD517090.1
      CGC01494_1
    Associated_feature: WBsf653819
      WBsf1004563
      WBsf1004564
      WBsf1022590
      WBsf237160
  Experimental_info: RNAi_result: WBRNAi00098170 Inferred_automatically: RNAi_primary
      WBRNAi00045796 Inferred_automatically: RNAi_primary
      WBRNAi00014031 Inferred_automatically: RNAi_primary
      WBRNAi00031513 Inferred_automatically: RNAi_primary
      WBRNAi00002129 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017501
      Expr1037692
      Expr1149708
      Expr2003092
      Expr2021306
    Drives_construct: WBCnstr00015934
      WBCnstr00026936
    Construct_product: WBCnstr00026936
    Microarray_results (17)
    Expression_cluster (264)
    Interaction: WBInteraction000031670
      WBInteraction000105900
      WBInteraction000125874
      WBInteraction000134203
      WBInteraction000146043
      WBInteraction000147405
      WBInteraction000148621
      WBInteraction000152941
      WBInteraction000168890
      WBInteraction000185056
      WBInteraction000186038
      WBInteraction000187344
      WBInteraction000194506
      WBInteraction000195518
      WBInteraction000198027
      WBInteraction000204524
      WBInteraction000204798
      WBInteraction000205088
      WBInteraction000210734
      WBInteraction000213194
      WBInteraction000221586
      WBInteraction000223733
      WBInteraction000238227
      WBInteraction000240929
      WBInteraction000241639
      WBInteraction000248867
      WBInteraction000249165
      WBInteraction000249737
      WBInteraction000252171
      WBInteraction000252692
      WBInteraction000255508
      WBInteraction000262467
      WBInteraction000286032
      WBInteraction000286576
      WBInteraction000287336
      WBInteraction000287977
      WBInteraction000291286
      WBInteraction000296039
      WBInteraction000297174
      WBInteraction000298765
      WBInteraction000311596
      WBInteraction000319644
      WBInteraction000329432
      WBInteraction000337473
      WBInteraction000342031
      WBInteraction000343990
      WBInteraction000345418
      WBInteraction000345847
      WBInteraction000351645
      WBInteraction000353839
      WBInteraction000354406
      WBInteraction000357853
      WBInteraction000361120
      WBInteraction000362772
      WBInteraction000373269
      WBInteraction000376680
      WBInteraction000376785
      WBInteraction000386304
      WBInteraction000388917
      WBInteraction000392139
      WBInteraction000392262
      WBInteraction000395627
      WBInteraction000396654
      WBInteraction000400311
      WBInteraction000406742
      WBInteraction000414835
      WBInteraction000422547
      WBInteraction000425434
      WBInteraction000431448
      WBInteraction000448245
      WBInteraction000450400
      WBInteraction000455355
      WBInteraction000456116
      WBInteraction000552248
      WBInteraction000552823
      WBInteraction000554995
      WBInteraction000562578
      WBInteraction000562582
      WBInteraction000563842
      WBInteraction000569389
      WBInteraction000571955
      WBInteraction000572748
      WBInteraction000583431
      WBInteraction000583615
  Map_info: Positive: Positive_clone: F28B4 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: X -10.7178
  Reference: WBPaper00031686
    WBPaper00053423
    WBPaper00061547
    WBPaper00064841
  Method: Gene