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WormBase Tree Display for Gene: WBGene00020895

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Name Class

WBGene00020895SMapS_parentSequenceT28D9
IdentityVersion2
NameCGC_nameplpp-1.2Person_evidenceWBPerson580
Sequence_nameT28D9.3
Molecular_name (13)
Other_nameCELE_T28D9.3Accession_evidenceNDBBX284602
Public_nameplpp-1.2
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:03WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
231 May 2017 14:23:55WBPerson2970Name_changeCGC_nameplpp-1.2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classplpp
AlleleWBVar00259465
WBVar01499702
WBVar00368317
WBVar00368318
WBVar00368319
WBVar00368320
WBVar00368321
WBVar01498435
WBVar01783755
WBVar00091842
WBVar01438188
WBVar00738370
WBVar00738371
WBVar00738372
WBVar00738373
WBVar00738374
WBVar00738375
WBVar00738376
WBVar00738377
WBVar00738378
WBVar00738379
WBVar00738380
WBVar00738381
WBVar00738382
WBVar00738383
WBVar00738384
WBVar00738385
WBVar00738386
WBVar00146089
WBVar00738387
WBVar00738388
WBVar00738389
WBVar00738390
WBVar00738391
WBVar00738392
WBVar00738393
WBVar00738394
WBVar00738395
WBVar00738396
WBVar00738397
WBVar00225033
WBVar01306902
WBVar02151039
StrainWBStrain00031488
RNASeq_FPKM (74)
GO_annotation00005278
00005279
00055921
00055922
00055923
00055924
00055925
00125415
Ortholog (32)
ParalogWBGene00008749Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00011524Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00018756Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; phospholipid metabolic process; and signal transduction. Predicted to be located in membrane. Is an ortholog of human PLPP3 (phospholipid phosphatase 3).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST28D9.3a
T28D9.3b
T28D9.3d
Corresponding_CDS_historyT28D9.3:wp127
T28D9.3c:wp247
T28D9.3e:wp247
Corresponding_transcriptT28D9.3c
T28D9.3e
T28D9.3a.1
T28D9.3b.1
T28D9.3b.2
T28D9.3d.1
T28D9.3d.2
Other_sequenceCRC12305_1
Tcol_isotig14688
JI167794.1
CR04593
Tcir_isotig11281
Acan_isotig07031
FK804452.1
Oden_isotig20541
Dviv_isotig23813
Name_isotig01768
Associated_featureWBsf644291
WBsf644292
WBsf644293
WBsf221451
WBsf221452
Experimental_infoRNAi_resultWBRNAi00054418Inferred_automaticallyRNAi_primary
WBRNAi00070139Inferred_automaticallyRNAi_primary
WBRNAi00019401Inferred_automaticallyRNAi_primary
Expr_patternExpr1027274
Expr1039103
Expr1157962
Expr2006622
Expr2024839
Drives_constructWBCnstr00024803
Construct_productWBCnstr00024803
Microarray_results (35)
Expression_clusterWBPaper00030922:glycosylated_protein
WBPaper00037946:EGL-5_interacting
WBPaper00037950:bodywall-muscle_larva_enriched
WBPaper00037950:bodywall-muscle_larva_SelectivelyEnriched
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_larva_enriched
WBPaper00037950:intestine_larva_SelectivelyEnriched
WBPaper00042194:Tryptophan_upregulated
WBPaper00044260:1-methylnicotinamide_downregulated
WBPaper00044616:alg-3-4_downregulated_gene
WBPaper00044736:flat_dev_expression
WBPaper00045417:128Q-huntingtin_upreglated
WBPaper00045521:Spermatogenic
WBPaper00045571:germline-ablation_upregulated
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00049368:daf-2(e1370)_upregulated
WBPaper00049484:elt-2(RNAi)_downregulated_L4
WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
WBPaper00050561:indole_0.1mM-indole_upregulated
WBPaper00050561:indole_10-fold_upregulated
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00051021:4-bromodiphenyl-ether_upregulated
WBPaper00051039:intestine_enriched
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:intestine_specific
WBPaper00051404:alg-1(gk214)_downregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster3
WBPaper00053599:female_vs_male_downregulated
WBPaper00053771:up_at_24h-NaCl
WBPaper00053771:up_at_dpy-7(e88)
WBPaper00053814:25C_downregulated_PY79
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056034:pals-25(jy9)_upregulated
WBPaper00056161:male_enriched_siRNA
WBPaper00056290:mdt-15(mg584)_upregulated
WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057006:DietaryRestriction_downregulated
WBPaper00057288:Cold_upregulated_transcript
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00058725:sftb-1(cer6)_downregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059604:fluvastatin_downregulated_dlk-1(km12)
WBPaper00059604:fluvastatin_downregulated_N2
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059839:S.maltophilia_regulated
WBPaper00060634:unc-120(st364)_downregulated
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061081:skpo-1(ok1640)_upregulated_OG1RF
WBPaper00061203:let-418(n3536)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061274:microgravity_upregulated
WBPaper00061341:28C_24h_upregulated
WBPaper00061479:mep-1(ne4629)_upregulated
WBPaper00061527:F54D5.3_7003-F54D5.3_7004
WBPaper00061590:CGP37157_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062520:qui-1(db104)_downregulated
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064156:lipl-4(overexpress)_upregulated
WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
WBPaper00064315:met-1(bn200)_downregulated_PGCs
WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
WBPaper00065029:cadmium_upregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065225:nhr-42(tm1375)_downregulated_S.aureus-infected
WBPaper00065841:1_1
WBPaper00065841:12_0
WBPaper00065841:27_0
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
cgc4489_group_8
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00031003:0hr_muscle_enriched
WBPaper00031003:24hr_muscle_enriched
WBPaper00031003:hlh_1_enriched
WBPaper00031003:total_muscle_enriched
WBPaper00031252:AIN-1_IP_enriched
WBPaper00031850:mdt-15(RNAi)_downregulated
WBPaper00035084:L3_enriched_AIN-2_IP
WBPaper00035479:daf-16(RNAi)_downregulated
WBPaper00035588:alg-1(-)_upregulated
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00036286:Pattern_I
WBPaper00036383:ash-2_L3_regulated
WBPaper00037695:WC_5-day
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00038231:Cry5B_2-fold_downregulated
WBPaper00038427:lin-54_embryo_changed
WBPaper00040210:Chlorpyrifos_24C_regulated
WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
WBPaper00040210:Diazinon_24C_regulated
WBPaper00040876:mir-35_downregulated
WBPaper00040963:Q100_up
WBPaper00040985:AIN-2_asynchronous_intestine
WBPaper00040985:AIN-2_L4_intestine
WBPaper00041002:HF_11d_2.0mM_Down
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041174:environmental
WBPaper00041174:environmental_prime
WBPaper00041211:RPW-24_Up
WBPaper00041606:CE_S.aureus_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
WBPaper00042178:hlh-29(tm284)_upregulated
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00045015:acs-3(ft5)_upregulated
WBPaper00045263:nuo-6(qm200)_upregulated
WBPaper00045673:colistin_upregulated
[cgc5976]:class_1
[cgc6390]:mixed_spermatogenesis-somatic
Interaction (19)
Map_infoMapIIPosition-0.219459
PositivePositive_cloneT28D9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00028527
WBPaper00038491
WBPaper00042257
WBPaper00055090
WBPaper00065998
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene