WormBase Tree Display for Gene: WBGene00016555

WBGene00016555 SMap: S_parent: Sequence: C40D2
  Identity: Version: 2
    Name: CGC_name: math-20 Person_evidence: WBPerson655
      Sequence_name: C40D2.2
      Molecular_name: C40D2.2
        C40D2.2.1
        CE19374
      Other_name: CELE_C40D2.2 Accession_evidence: NDB BX284602
      Public_name: math-20
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 12 Dec 2005 17:54:47 WBPerson2970 Name_change: CGC_name: math-20
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: math
    Allele: WBVar01933660
      WBVar01499702
      WBVar01933661
      WBVar01933662
      WBVar02120604
      WBVar02123182
      WBVar02099259
      WBVar02123007
      WBVar02121537
      WBVar02028767
      WBVar02035381
      WBVar02122097
      WBVar01500106
      WBVar01823055
      WBVar01823056
      WBVar02014285
      WBVar01436255
      WBVar01436257
      WBVar02124326
      WBVar01436258
      WBVar02108503
      WBVar01788957
      WBVar01788958
      WBVar02121946
      WBVar01763638
      WBVar01763639
      WBVar01763640
      WBVar01763641
      WBVar01763642
      WBVar01763643
      WBVar01763644
      WBVar01763645
      WBVar01763646
      WBVar01684371
      WBVar01684372
      WBVar01684373
      WBVar02124543
      WBVar01684374
      WBVar01684375
      WBVar01684376
      WBVar01684377
      WBVar01499231
      WBVar01684378
      WBVar01684379
      WBVar02122524
      WBVar02112034
      WBVar01684380
      WBVar01684381
      WBVar01684382
      WBVar00358287
      WBVar00358288
      WBVar00358289
      WBVar01891482
      WBVar01624627
      WBVar00098633
      WBVar02118866
      WBVar00098634
      WBVar01624628
      WBVar01296716
      WBVar01296719
      WBVar01898406
      WBVar01296720
      WBVar02017558
      WBVar01898407
      WBVar01296721
      WBVar01296722
      WBVar01898408
      WBVar01296723
      WBVar01898409
      WBVar01296724
      WBVar01296725
      WBVar01296726
      WBVar01296727
      WBVar01296729
      WBVar01665624
      WBVar01493946
      WBVar02102884
      WBVar02102885
      WBVar00708972
      WBVar00708973
      WBVar00708974
      WBVar02097551
      WBVar02097552
      WBVar00708975
      WBVar00708976
      WBVar00708977
      WBVar00708978
      WBVar00708979
      WBVar01477029
      WBVar00043041
      WBVar00708980
      WBVar00708981
      WBVar00708982
      WBVar02122773
      WBVar00708983
      WBVar00708984
      WBVar00708985
      WBVar00708986
      WBVar01575982
      WBVar01575983
      WBVar02121124
      WBVar01908227
      WBVar01908228
      WBVar01908229
      WBVar01535123
      WBVar01535124
      WBVar01535125
      WBVar01705326
      WBVar01535126
      WBVar01535127
      WBVar01535128
      WBVar01718052
      WBVar01535129
      WBVar01718053
      WBVar01718054
      WBVar01535130
      WBVar01718055
      WBVar01535131
      WBVar01718056
      WBVar01535132
      WBVar01535133
      WBVar01718057
      WBVar01535134
      WBVar01718058
      WBVar00091058
      WBVar01535135
      WBVar01718059
      WBVar02109730
      WBVar01535136
      WBVar01535137
      WBVar02122433
      WBVar02120776
    RNASeq_FPKM (74)
    Ortholog (18)
    Paralog (84)
    Structured_description: Concise_description: The C40D2.2 gene encodes a protein closely similar to C46F9.3, which has a meprin-associated Traf homology (MATH) domain and may be involved in apoptosis. Paper_evidence: WBPaper00004589
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in intestine based on tiling array; RNA-seq; and proteomic studies. Is affected by several genes including daf-16; daf-2; and glp-1 based on microarray and RNA-seq studies. Is affected by eighteen chemicals including rotenone; stavudine; and Rifampin based on RNA-seq; microarray; and proteomic studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C40D2.2
    Corresponding_transcript: C40D2.2.1
    Associated_feature: WBsf220897
  Experimental_info: RNAi_result: WBRNAi00029705 Inferred_automatically: RNAi_primary
      WBRNAi00021930 Inferred_automatically: RNAi_primary
      WBRNAi00042253 Inferred_automatically: RNAi_primary
      WBRNAi00042254 Inferred_automatically: RNAi_primary
      WBRNAi00011815 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1146245
      Expr2013397
      Expr2031631
    Drives_construct: WBCnstr00027980
    Construct_product: WBCnstr00027980
    Microarray_results (15)
    Expression_cluster: WBPaper00031040:Cluster_5
      WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00032425:up_in_lin-35
      WBPaper00032479:CB4856vsN2_LifeStageProfile_Variation
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:intestine_embryo_enriched
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00038168:lin-15B(n744)_upregulated
      WBPaper00038168:lin-35_upregulated
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00044037:eat-2_upregulated
      WBPaper00044426:rotenone_24h_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(gk119)_upregulated
      WBPaper00045316:prg-1_upregulated_L4
      WBPaper00045934:wrn-1(gk99)_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
      WBPaper00047132:glp-1(ts)-25C_upregulated
      WBPaper00049334:CE_intestine_enriched
      WBPaper00049495:starvation-refeeding_regulated
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_24-cell-embryo
      WBPaper00050332:daf-16(RNAi)_downregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_25C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051039:intestine_enriched
      WBPaper00051137:Orsay-virus_upregulated_rde-1(ne219)
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:intestine_specific
      WBPaper00051404:alg-1(gk214)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053388:dauer_regulated_Cluster6
      WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055386:eat-2(ad465)_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056034:pals-25(jy9)_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056167:Cry5B_downregulated
      WBPaper00056284:ints-5(RNAi)_upregulated
      WBPaper00056284:ints-6(t1903)_upregulated
      WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057068:ints-4(RNAi)_downregulated
      WBPaper00057154:HeatShock_downregulated_miRNA-target
      WBPaper00057154:HeatShock_upregulated_mRNA
      WBPaper00057158:mdt-15(tm2182)_dependent_15C_downregulated
      WBPaper00057347:nhr-14(tm1473)_upreglated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059191:hsp-16.2p-LIN-29_downregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059987:Wounding_downregulated
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060278:atp-2(RNAi)_upregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
      WBPaper00061007:HB101_upregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061319:pnp-1(jy90)_upregulated
      WBPaper00061319:pnp-1(jy121)_upregulated
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061527:F58F9.3_11574-R07B7.6
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062354:H.zoospora_6h_regulated
      WBPaper00062440:crh-1(n3315)_downregulated
      WBPaper00062456:doxycycline_upregulated_CB4856_protein
      WBPaper00062456:doxycycline_upregulated_N2_protein
      WBPaper00064071:NHR-49_interacting
      WBPaper00064107:lin-35(n745)_upregulated
      WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
      WBPaper00064939:vit-5(RNAi)_upregulated
      WBPaper00065029:cadmium_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      cgc4489_group_8
      WBPaper00005124:progesterone_10-7M_regulated
      WBPaper00024671:AFD_AWB_vs_unsorted_downregulated
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00029437:rde-4_upregulated
      WBPaper00034739:N2moreDR1350
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00035873:osm-8_regulated
      WBPaper00036286:Pattern_I
      WBPaper00037113:Diazinon_16C_regulated
      WBPaper00038304:octr-1_regulated
      WBPaper00040210:Chlorpyrifos_16C_regulated
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040858:eQTL_regulated_old
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00041002:HQ_3d_0.2mM_Up
      WBPaper00041002:HQ_3d_2.0mM_Up
      WBPaper00041939:control_vs_UVC-exposed_24h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_24h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045673:colistin_upregulated
      WBPaper00046548:dafachronic-acid_upregulated
      WBPaper00047070:N2_UV_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc6390]:Cluster_B
      [cgc6390]:herm_soma-enriched
    Interaction (11)
  Map_info: Map: II Position: -14.0533 Error: 0.00423
    Positive: Positive_clone: C40D2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene