WormBase Tree Display for Gene: WBGene00009826

WBGene00009826 SMap: S_parent: Sequence: F47G4
  Identity: Version: 1
    Name: Sequence_name: F47G4.5
      Molecular_name: F47G4.5
        F47G4.5.1
        CE18703
      Other_name: CELE_F47G4.5 Accession_evidence: NDB BX284601
      Public_name: F47G4.5
    DB_info: Database: AceView gene 1O654
        WormQTL gene WBGene00009826
        WormFlux gene WBGene00009826
        NDB locus_tag CELE_F47G4.5
        Panther gene CAEEL|WormBase=WBGene00009826|UniProtKB=Q9XTS3
          family PTHR19845
        NCBI gene 173270
        RefSeq protein NM_061051.5
        TREEFAM TREEFAM_ID TF343524
        TrEMBL UniProtAcc Q9XTS3
        UniProt_GCRP UniProtAcc Q9XTS3
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01499739
      WBVar00351605
      WBVar00351606
      WBVar00351607
      WBVar00351608
      WBVar00351609
      WBVar00351610
      WBVar00351611
      WBVar00142695
      WBVar02068094
      WBVar00259199
      WBVar01499999
      WBVar01714688
      WBVar01714689
      WBVar01499823
      WBVar00093774
      WBVar01890972
      WBVar01890973
      WBVar01498939
      WBVar00689103
      WBVar00689104
      WBVar00601894
      WBVar00689105
      WBVar00689106
      WBVar00689107
      WBVar00689108
      WBVar00689109
      WBVar00689110
      WBVar00689111
      WBVar00689112
      WBVar00689113
      WBVar00689114
      WBVar00689115
      WBVar00689116
      WBVar00689117
      WBVar00689118
      WBVar02151421
    Strain: WBStrain00032698
    RNASeq_FPKM (74)
    GO_annotation: 00101084
      00101085
      00101086
      00101087
      00101088
      00101089
      00101090
    Ortholog (20)
    Paralog: WBGene00003184 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00009825 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: F47G4.5 encodes a paralog of MEI-2 that, like MEI-2, binds MEI-1 in vitro; F47G4.5 might thus be an alternative ligand of MEI-1 in vivo. Paper_evidence: WBPaper00004129
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Contributes to microtubule severing ATPase activity. Involved in microtubule depolymerization. Part of katanin complex. Expressed in amphid neurons; inner labial neurons; outer labial neurons; and phasmid neurons. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F47G4.5
    Corresponding_transcript: F47G4.5.1
    Associated_feature: WBsf649733
      WBsf986022
      WBsf220567
  Experimental_info: RNAi_result: WBRNAi00003700 Inferred_automatically: RNAi_primary
      WBRNAi00032452 Inferred_automatically: RNAi_primary
      WBRNAi00115723 Inferred_automatically: RNAi_primary
      WBRNAi00098000 Inferred_automatically: RNAi_primary
      WBRNAi00047683 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr12682
      Expr12683
      Expr1019835
      Expr1151524
      Expr2003865
      Expr2022088
    Drives_construct: WBCnstr00022602
      WBCnstr00022603
      WBCnstr00031889
    Construct_product: WBCnstr00022603
      WBCnstr00031889
    Microarray_results (16)
    Expression_cluster: WBPaper00037682:sma-2_upregulated
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_embryo_enriched
      WBPaper00037950:dopaminergic-neurons_embryo_SelectivelyEnriched
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045390:tunicamycin_downregulated
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00055103:thoc-5(wy822)_upregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Psora_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056169:rrf-3(pk1426)_upregulated_L2
      WBPaper00057068:numr-1(RNAi)_downregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059754:E.faecalis_OG1RF_upregulated
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060445:nfki-1(cer1)_downregulated_L4
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061340:ADE
      WBPaper00061340:ADF
      WBPaper00061340:ADL
      WBPaper00061340:ASE
      WBPaper00061340:ASG
      WBPaper00061340:ASH
      WBPaper00061340:ASI
      WBPaper00061340:ASJ
      WBPaper00061340:ASK
      WBPaper00061340:AWA
      WBPaper00061340:AWC
      WBPaper00061340:BAG
      WBPaper00061340:CEP
      WBPaper00061340:IL1
      WBPaper00061340:URX
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061527:rab-28-jbts-14_9542
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062497:xpf-1(tm2842)_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00065086:N2_N.ausubeli_regulated
      WBPaper00065158:25C_vs_15C_downregulated_AFD
      WBPaper00065158:AFD_enriched
      WBPaper00065841:35_4
      WBPaper00065841:36_0
      WBPaper00065841:36_2
      WBPaper00065841:36_3
      WBPaper00065841:39_0
      WBPaper00065841:39_1
      WBPaper00065841:47_0
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066232:ash-2(RNAi)_upregulated_WT
      cgc4489_group_17
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00036130:mir-243_up_regulated
      WBPaper00039866:ClassComp_daf-19_downregulated
      WBPaper00039866:SAM_daf-19_downregulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00042548:miRISC_enriched
      WBPaper00045294:0.1uM_TBBP_downregulated
      WBPaper00045673:colistin_upregulated
      WBPaper00053550:daf-19(m86)_downregulated_3-fold-embryo
      [cgc5376]:let-60(G12V)-regulated_genes
    Interaction (13)
  Map_info: Positive: Positive_clone: F47G4 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I 22.9922
  Reference: WBPaper00004129
  Method: Gene