WormBase Tree Display for Gene: WBGene00009823

WBGene00009823 SMap: S_parent: Sequence: F47G4
  Identity: Version: 2
    Name: CGC_name: gadr-6 Person_evidence: WBPerson206
      Sequence_name: F47G4.2
      Molecular_name: F47G4.2
        F47G4.2.1
        CE19875
        F47G4.2.2
      Other_name: CELE_F47G4.2 Accession_evidence: NDB BX284601
      Public_name: gadr-6
    DB_info: Database: AceView gene 1O670
        WormQTL gene WBGene00009823
        WormFlux gene WBGene00009823
        NDB locus_tag CELE_F47G4.2
        Panther gene CAEEL|WormBase=WBGene00009823|UniProtKB=Q9XTS0
          family PTHR12904
        NCBI gene 173273
        RefSeq protein NM_061054.9
        TREEFAM TREEFAM_ID TF322626
        TrEMBL UniProtAcc Q9XTS0
        UniProt_GCRP UniProtAcc Q9XTS0
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 12 Oct 2010 11:39:13 WBPerson2970 Name_change: CGC_name: gadr-6
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: gadr
    Allele: WBVar00094574 Inferred_automatically: From strain object: RB2593
      WBVar01825417
      WBVar01496765
      WBVar02016882
      WBVar00253603
      WBVar02151826
      WBVar01499739
      WBVar01476565
      WBVar01476566
      WBVar01354256
      WBVar02150363
      WBVar01498668
      WBVar02002439
      WBVar00351652
      WBVar00351653
      WBVar00351654
      WBVar00351655
      WBVar00351656
      WBVar00351657
      WBVar00351658
      WBVar02129001
      WBVar02129002
      WBVar01499999
      WBVar01493933
      WBVar01499823
      WBVar01502225
      WBVar01714707
      WBVar01714708
      WBVar01714709
      WBVar01714710
      WBVar01714711
      WBVar00689263
      WBVar00689264
      WBVar00689265
      WBVar00689266
      WBVar00689267
      WBVar00689268
      WBVar00689269
      WBVar00689270
      WBVar00689271
      WBVar01890975
      WBVar00689272
      WBVar01890976
      WBVar00689273
      WBVar01890977
      WBVar00689274
      WBVar00689275
      WBVar01890978
      WBVar00689276
      WBVar00689277
      WBVar00689278
      WBVar00689279
      WBVar00689280
      WBVar00689281
      WBVar00689282
      WBVar00689283
      WBVar00689284
      WBVar01498939
      WBVar00689285
      WBVar00689286
      WBVar00689287
      WBVar00689288
      WBVar00689289
      WBVar00689290
      WBVar00689291
      WBVar00689292
      WBVar00689293
      WBVar00689294
      WBVar01948419
      WBVar00262401
    Strain: WBStrain00033268
    RNASeq_FPKM (74)
    GO_annotation: 00101075
    Ortholog (23)
    Paralog (32)
    Structured_description: Automated_description: Predicted to be part of Cul2-RING ubiquitin ligase complex. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F47G4.2
    Corresponding_transcript: F47G4.2.1
      F47G4.2.2
    Associated_feature: WBsf649735
      WBsf665094
      WBsf986038
      WBsf1011176
      WBsf220569
  Experimental_info: RNAi_result: WBRNAi00003698 Inferred_automatically: RNAi_primary
      WBRNAi00047680 Inferred_automatically: RNAi_primary
      WBRNAi00032449 Inferred_automatically: RNAi_primary
      WBRNAi00073102 Inferred_automatically: RNAi_primary
      WBRNAi00001640 Inferred_automatically: RNAi_primary
      WBRNAi00022574 Inferred_automatically: RNAi_primary
    Expr_pattern (5)
    Drives_construct: WBCnstr00031891
    Construct_product: WBCnstr00031891
    Microarray_results (16)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_embryo_enriched
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00042477:prp-8(RNAi)_upregulated_RNAseq
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(gk119)_downregulated
      WBPaper00045521:Oogenic
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00046805:csr-1(RNAi)_downregulated_Set1
      WBPaper00048952:glucose_repressed
      WBPaper00048988:neuron_expressed
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050496:unc-39(hp701)_regulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051305:vit-2(ac3)_upregulated
      WBPaper00051461:pig-1(gm344)_upregulated
      WBPaper00051558:aging_regulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053295:lin-22(icb38)_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053318:Aging_upregulated_mRNA_N2
      WBPaper00053321:embryo-to-L1_downregulated_WT_SMARTseq
      WBPaper00053321:lin-15B(RNAi)_downregulated_starved-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053599:mitosis_vs_meiosis_downregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00053664:ins-11(tm1053)_downregulated
      WBPaper00053810:clk-1(qm30)_upregulated
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056293:rpl-5(0)-rpl-33(0)_upregulated
      WBPaper00056443:DietaryRestriction_upregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00056826:SGP_biased
      WBPaper00057068:Cadmium_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated_Cadmium
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00059334:sacy-1(depletion)_regulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059471:EGL-43_interacting
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060909:atfs-1(et18)_upregulated
      WBPaper00061340:Intestinal_and_rectal_muscle
      WBPaper00061340:Neuroblast_AFD_RMD
      WBPaper00061340:Parents_of_U_F_B_DVA
      WBPaper00061340:Parent_of_AMsh_URB
      WBPaper00061340:RME_LR_parent
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061527:nrde-3-tra-4_10484
      WBPaper00061530:nhr-49(e2144)_upregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062146:MOG-7-degron_2h_regulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062456:doxycycline_downregulated_CB4856_transcript
      WBPaper00062456:doxycycline_downregulated_N2_transcript
      WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
      WBPaper00064315:mes-4(bn73)_upregulated_PGCs
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00064494:postdauer_upregulated_AWA
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064539:nhr-114(gk849)_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064992:Capsaicin_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065835:Day11_vs_Day1_upregulated
      WBPaper00065945:epidermis-rpoa-2(-)_upregulated_transcript
      WBPaper00065945:global-rpoa-2(-)_upregulated_transcript
      WBPaper00066110:Doxorubicin_downregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      cgc4386_cluster_6_1
      cgc4489_group_4
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036286:Pattern_D
      WBPaper00036286:Pattern_F
      WBPaper00037611:GLD-2-associated
      WBPaper00037695:WC_5-day
      WBPaper00038231:Cry5B_1.5-fold_upregulated
      WBPaper00039866:ClassComp_daf-19_upregulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_old
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00040985:AIN-2_asynchronous_intestine
      WBPaper00040985:AIN-2_asynchronous_muscle
      WBPaper00040985:AIN-2_L4_intestine
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_51h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:control_vs_UVC-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00042548:miRISC_enriched
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00045263:ProLongevity-mtROS_upregulated
      WBPaper00045960:L1-L4-lethargus_downregulated
      WBPaper00045960:L4-lethargus_downregulated
      WBPaper00047070:DAF-16-dependent_UV_response
      WBPaper00047070:N2_UV_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00053550:daf-19(m86)_upregulated_3-fold-embryo
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(83_min)
      [cgc5767]:expression_class_E_pi(101_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc6390]:mixed_oogenesis-somatic
    Interaction (15)
  Map_info: Map: I Position: 23.039 Error: 0.0094
    Positive: Positive_clone: F47G4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038341
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene