WormBase Tree Display for Variation: WBVar01429591

WBVar01429591 Name: Public_name: tm5917
    Other_name: C41C4.5c.1:c.208-2_611del
      C41C4.5c.2:c.208-2_611del
      C41C4.5h.1:c.526-2_929del
      C41C4.5d.1:c.526-2_929del
      C41C4.5a.1:c.268-2_671del
      C41C4.5e.1:c.526-2_929del
      C41C4.4a.1:c.801+2946_801+3584del
      C41C4.5b.1:c.382-2_785del
    HGVSg: CHROMOSOME_II:g.8119327_8119965del
  Sequence_details: SMap: S_parent: Sequence: C41C4
    Flanking_sequences: cacctcaataataacttttaaaaaaatttt tacggtttctaaagcactttggccatgttt
    Mapping_target: C41C4
    Source_location: 7 CHROMOSOME_II 8119326 8119966 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm5917_external
      tm5917_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5917
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00002147
      WBGene00006832
    Transcript: C41C4.5e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C41C4.5e.1:c.526-2_929del
        cDNA_position: ?-956
        CDS_position: ?-929
        Protein_position: ?-310
        Intron_number: 5-6/15
        Exon_number: 6-7/16
      C41C4.4a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: C41C4.4a.1:c.801+2946_801+3584del
        Intron_number: 6/11
      C41C4.5c.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C41C4.5c.2:c.208-2_611del
        cDNA_position: ?-885
        CDS_position: ?-611
        Protein_position: ?-204
        Intron_number: 6-7/14
        Exon_number: 7-8/15
      C41C4.5c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C41C4.5c.1:c.208-2_611del
        cDNA_position: ?-950
        CDS_position: ?-611
        Protein_position: ?-204
        Intron_number: 5-6/15
        Exon_number: 6-7/16
      C41C4.5d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C41C4.5d.1:c.526-2_929del
        cDNA_position: ?-950
        CDS_position: ?-929
        Protein_position: ?-310
        Intron_number: 5-6/13
        Exon_number: 6-7/14
      C41C4.5a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C41C4.5a.1:c.268-2_671del
        cDNA_position: ?-768
        CDS_position: ?-671
        Protein_position: ?-224
        Intron_number: 4-5/14
        Exon_number: 5-6/15
      C41C4.5h.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C41C4.5h.1:c.526-2_929del
        cDNA_position: ?-929
        CDS_position: ?-929
        Protein_position: ?-310
        Intron_number: 4-5/14
        Exon_number: 5-6/15
      C41C4.5b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C41C4.5b.1:c.382-2_785del
        cDNA_position: ?-968
        CDS_position: ?-785
        Protein_position: ?-262
        Intron_number: 4-5/14
        Exon_number: 5-6/15
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 19854/19855-20493/20494 (639 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele