WormBase Tree Display for Variation: WBVar00142938

WBVar00142938 Evidence: Paper_evidence: WBPaper00006005
  Name: Public_name: e55
    Other_name (30)
    HGVSg: CHROMOSOME_X:g.2723343G>A
  Sequence_details: SMap: S_parent: Sequence: T02C5
    Flanking_sequences: agacggcgagccgctaataaaaagttaaaa aagcctcaaaacagcagtctacagaaactg
    Mapping_target: T02C5
    Type_of_mutation: Substitution: c t Paper_evidence: WBPaper00006005
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain (14)
    Laboratory: CB
    Status: Live
  Affects: Gene: WBGene00006742
    Transcript (15)
    Interactor: WBInteraction000052099
      WBInteraction000052101
      WBInteraction000501477
      WBInteraction000501479
      WBInteraction000502185
  Isolation: Mutagen: EMS
  Genetics: Interpolated_map_position: X -13.8024
    Mapping_data: In_2_point: 154
        3151
      In_multi_point (14)
      In_pos_neg_data (18)
  Description: Phenotype (16)
    Phenotype_not_observed: WBPhenotype:0001182 Paper_evidence: WBPaper00031915
        Curator_confirmed: WBPerson2021
        Remark: Mutants had wild-type fat content Paper_evidence: WBPaper00031915
            Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: Fat content was visualized by Nile red staining Paper_evidence: WBPaper00031915
              Curator_confirmed: WBPerson2021
      WBPhenotype:0001645 Paper_evidence: WBPaper00040284
        Curator_confirmed: WBPerson2987
        Remark: Table S2 Paper_evidence: WBPaper00040284
            Curator_confirmed: WBPerson2987
      WBPhenotype:0001660 Paper_evidence: WBPaper00006052
        Curator_confirmed: WBPerson2021
        Remark: No disruption of ASE asymmetry (as seen with lim-6 and gcy-7 reporters) Paper_evidence: WBPaper00006052
            Curator_confirmed: WBPerson2021
        Variation_effect: Hypomorph_reduction_of_function: Paper_evidence: WBPaper00006052
            Curator_confirmed: WBPerson2021
        Phenotype_assay: Genotype: otIs114, otIs6, otIs3 Paper_evidence: WBPaper00006052
              Curator_confirmed: WBPerson2021
      WBPhenotype:0001811 Paper_evidence: WBPaper00031915
        Curator_confirmed: WBPerson2021
        Remark: Mutants were susceptible to the fat-reducing effects of exogenously administered serotonin Paper_evidence: WBPaper00031915
            Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: Reduced fat content of 5-HT-treated animals was visualized by Nile red staining and confirmed by thin-layer chromatography (TLC) quantitation of total triglycerides extracted from vehicle- and 5-HT-treated worms and by Sudan black fat staining Paper_evidence: WBPaper00031915
              Curator_confirmed: WBPerson2021
  Reference: WBPaper00022744
    WBPaper00039901
    WBPaper00039865
    WBPaper00040284
    WBPaper00001709
    WBPaper00000031
    WBPaper00006052
    WBPaper00019070
    WBPaper00031915
    WBPaper00003760
    WBPaper00003955
    WBPaper00014960
    WBPaper00029404
    WBPaper00006005
    WBPaper00018051
    WBPaper00015459
    WBPaper00023702
    WBPaper00042396
    WBPaper00045955
    WBPaper00048388
    WBPaper00065262
  Remark: Resequencing of e55 places the lesion at Q(458) (in isoform T02C5.5b) with flanks of agacggcgagccgctaataaaaagttaaaa & aagcctcaaaacagcagtctacagaaactg Person_evidence: WBPerson12335
      Laboratory_evidence: KG
    Following genotyping from the CGC we are updating the flanking sequences to follow both the reported update from 2011 and those now supplied by the CGC. Old flanks [tgttgccattcagttggaaaattcatcaaa aactgaggtaagaataaataatagtgtttt]. Person_evidence: WBPerson2207
      Curator_confirmed: WBPerson1983
  Method: Substitution_allele