WormBase Tree Display for Variation: WBVar00090803

WBVar00090803 Evidence: Paper_evidence: WBPaper00031335
  Name: Public_name: n4115
    Other_name: F16A11.3d.1:c.927+2433_927+2513del
      F16A11.6:n.14_94del
      F16A11.3c.1:c.711+2433_711+2513del
      F16A11.3a.1:c.711+2433_711+2513del
      F16A11.3b.1:c.711+2433_711+2513del
    HGVSg: CHROMOSOME_I:g.9379959_9380039del
  Sequence_details: SMap: S_parent: Sequence: F16A11
    Flanking_sequences: CGATCCCGACGGCGAAAAACAG GTTTCAACACTGAGGTTTTGTTGGAAAGT
    Mapping_target: F16A11
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00027418
    Laboratory: MT
    Status: Live
  Affects: Gene: WBGene00197324
      WBGene00003299
      WBGene00305537
      WBGene00008878
    Transcript: F16A11.3c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F16A11.3c.1:c.711+2433_711+2513del
        Intron_number: 5/15
      F16A11.4
      F16A11.6 VEP_consequence: non_coding_transcript_exon_variant
        VEP_impact: MODIFIER
        HGVSc: F16A11.6:n.14_94del
        cDNA_position: 14-94
        Exon_number: 1/1
      F16A11.3a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F16A11.3a.1:c.711+2433_711+2513del
        Intron_number: 6/25
      F16A11.3b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F16A11.3b.1:c.711+2433_711+2513del
        Intron_number: 6/24
      M04C9.10
      F16A11.3d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F16A11.3d.1:c.927+2433_927+2513del
        Intron_number: 7/25
    Interactor (18)
  Isolation: Mutagen: UV-TMP Paper_evidence: WBPaper00031335
  Genetics: Interpolated_map_position: I 3.75895
  Description: Phenotype: WBPhenotype:0001171 Paper_evidence: WBPaper00040961
          WBPaper00042527
        Curator_confirmed: WBPerson557
          WBPerson3660
        Remark: severe Paper_evidence: WBPaper00042527
            Curator_confirmed: WBPerson3660
    Phenotype_not_observed: WBPhenotype:0000006 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: non-Egl Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000207 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Defecation cycle is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000634 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Pumping is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000637 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: No defects in dauer formation Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000643 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: non-Unc Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0001233 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Cell number and nuclear staining is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: DAPI staining Paper_evidence: WBPaper00031335
              Curator_confirmed: WBPerson2021
      WBPhenotype:0002535 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: non-Dyf Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        EQ_annotations: Anatomy_term: WBbt:0005666 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005667 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005668 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005665 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005661 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0007807 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0007808 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: DiO staining Paper_evidence: WBPaper00031335
              Curator_confirmed: WBPerson2021
  Reference: WBPaper00040961
    WBPaper00031335
    WBPaper00042527
  Method: Deletion_allele