WormBase Tree Display for Gene: WBGene00003299
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| WBGene00003299 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F16A11 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-71 | Person_evidence | WBPerson18 | |||||
| Sequence_name | F16A11.4 | ||||||||
| Molecular_name | F16A11.4 | ||||||||
| F16A11.4a | |||||||||
| F16A11.4b | |||||||||
| Other_name | cel-mir-71 | Remark | miRBase V21 import | ||||||
| MirGeneDB 2.1 import | |||||||||
| CELE_F16A11.4 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | mir-71 | ||||||||
| DB_info | Database | miRBase | acc | MI0000042 | |||||
| SignaLink | mirna | cel-mir-71 | |||||||
| MirGeneDB | cel | Cel-Mir-71 | |||||||
| NDB | locus_tag | CELE_F16A11.4 | |||||||
| NCBI | gene | 260100 | |||||||
| RefSeq | protein | NR_000170.2 | |||||||
| RNAcentral | URSid | URS0000290146 | |||||||
| URS00002E71FF | |||||||||
| URS0000616756 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar01499161 | ||||||||
| WBVar01500105 | |||||||||
| WBVar01499739 | |||||||||
| WBVar01499786 | |||||||||
| WBVar01499054 | |||||||||
| WBVar00090794 | |||||||||
| WBVar00090803 | |||||||||
| WBVar01498959 | |||||||||
| Strain | WBStrain00027418 | ||||||||
| In_cluster | MIR-71 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Structured_description | Concise_description | mir-71 encodes a microRNA, a small non-protein coding RNA and appears to be conserved in C. briggsae; mir-71 is expressed weakly in the embryo and early larval stages and strongly in the L4 and adult stage in normal worms and in glp-4(bn2) mutant adults. | Paper_evidence | WBPaper00004927 | |||||
| WBPaper00005825 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson324 | |||||||||
| Date_last_updated | 30 Mar 2015 00:00:00 | ||||||||
| Automated_description | Enables mRNA 3'-UTR binding activity. Involved in several processes, including determination of adult lifespan; determination of left/right asymmetry in nervous system; and miRNA-mediated post-transcriptional gene silencing. Predicted to be part of RISC complex. Expressed in several structures, including AWC; excretory cell; muscle cell; somatic gonad; and vulval precursor cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | F16A11.4 | |||||||
| F16A11.4a | |||||||||
| F16A11.4b | |||||||||
| Other_sequence | AJ487594 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00102733 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr2517 | ||||||||
| Expr8466 | |||||||||
| Expr9726 | |||||||||
| Expr10015 | |||||||||
| Expr10194 | |||||||||
| Expr10937 | |||||||||
| Expr12849 | |||||||||
| Expr14885 | |||||||||
| Expr15762 | |||||||||
| Drives_construct | WBCnstr00005554 | ||||||||
| WBCnstr00014525 | |||||||||
| WBCnstr00015508 | |||||||||
| WBCnstr00022900 | |||||||||
| WBCnstr00042510 | |||||||||
| Construct_product | WBCnstr00014522 | ||||||||
| WBCnstr00014523 | |||||||||
| WBCnstr00014524 | |||||||||
| Regulate_expr_cluster | WBPaper00053318:mir-71(n4115)_downregulated_miRNA | ||||||||
| WBPaper00053318:mir-71(n4115)_downregulated_mRNA | |||||||||
| WBPaper00053318:mir-71(n4115)_upregulated_miRNA | |||||||||
| WBPaper00053318:mir-71(n4115)_upregulated_mRNA | |||||||||
| Expression_cluster (33) | |||||||||
| Interaction (44) | |||||||||
| Anatomy_function | WBbtf0507 | ||||||||
| WBbtf0514 | |||||||||
| WBProcess | WBbiopr:00000001 | ||||||||
| WBbiopr:00000074 | |||||||||
| Map_info | Map | I | Position | 3.75895 | Error | 0.000591 | |||
| Positive | Positive_clone | F16A11 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (40) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
