WormBase Tree Display for Variation: WBVar00090803
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WBVar00090803 | Evidence | Paper_evidence | WBPaper00031335 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | n4115 | |||||
Other_name | F16A11.3d.1:c.927+2433_927+2513del | ||||||
F16A11.6:n.14_94del | |||||||
F16A11.3c.1:c.711+2433_711+2513del | |||||||
F16A11.3a.1:c.711+2433_711+2513del | |||||||
F16A11.3b.1:c.711+2433_711+2513del | |||||||
HGVSg | CHROMOSOME_I:g.9379959_9380039del | ||||||
Sequence_details | SMap | S_parent | Sequence | F16A11 | |||
Flanking_sequences | CGATCCCGACGGCGAAAAACAG | GTTTCAACACTGAGGTTTTGTTGGAAAGT | |||||
Mapping_target | F16A11 | ||||||
Type_of_mutation | Deletion | ||||||
SeqStatus | Sequenced | ||||||
Variation_type | Allele | ||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain | WBStrain00027418 | ||||||
Laboratory | MT | ||||||
Status | Live | ||||||
Affects | Gene | WBGene00197324 | |||||
WBGene00003299 | |||||||
WBGene00305537 | |||||||
WBGene00008878 | |||||||
Transcript | F16A11.3c.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | ||||||
HGVSc | F16A11.3c.1:c.711+2433_711+2513del | ||||||
Intron_number | 5/15 | ||||||
F16A11.4 | |||||||
F16A11.6 | VEP_consequence | non_coding_transcript_exon_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | F16A11.6:n.14_94del | ||||||
cDNA_position | 14-94 | ||||||
Exon_number | 1/1 | ||||||
F16A11.3a.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | F16A11.3a.1:c.711+2433_711+2513del | ||||||
Intron_number | 6/25 | ||||||
F16A11.3b.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | F16A11.3b.1:c.711+2433_711+2513del | ||||||
Intron_number | 6/24 | ||||||
M04C9.10 | |||||||
F16A11.3d.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | F16A11.3d.1:c.927+2433_927+2513del | ||||||
Intron_number | 7/25 | ||||||
Interactor (18) | |||||||
Isolation | Mutagen | UV-TMP | Paper_evidence | WBPaper00031335 | |||
Genetics | Interpolated_map_position | I | 3.75895 | ||||
Description | Phenotype | WBPhenotype:0001171 | Paper_evidence | WBPaper00040961 | |||
WBPaper00042527 | |||||||
Curator_confirmed | WBPerson557 | ||||||
WBPerson3660 | |||||||
Remark | severe | Paper_evidence | WBPaper00042527 | ||||
Curator_confirmed | WBPerson3660 | ||||||
Phenotype_not_observed (7) | |||||||
Reference | WBPaper00040961 | ||||||
WBPaper00031335 | |||||||
WBPaper00042527 | |||||||
Method | Deletion_allele |