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WormBase Tree Display for Variation: WBVar00000091

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Name Class

WBVar00000091EvidencePaper_evidenceWBPaper00003954
NamePublic_namead1302
Other_namead1032Paper_evidenceWBPaper00027150
CE32092:p.Val60Glu
CE26421:p.Val60Glu
CE30227:p.Val60Glu
B0207.12a.1:c.179T>A
B0207.12b.1:c.179T>A
B0207.12c.1:c.179T>A
B0207.12a.2:c.179T>A
B0207.12a.3:c.179T>A
HGVSgCHROMOSOME_I:g.5972722A>T
Sequence_detailsSMapS_parentSequenceB0207
Flanking_sequencesgatattgatcgaagataaatgtttactgtcctagaacgggtccaccggtatctgatagtt
Mapping_targetB0207
Type_of_mutationSubstitutionatCurator_confirmedWBPerson4055
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
Strain (16)
LaboratoryDA
StatusLive
AffectsGeneWBGene00000232
TranscriptB0207.12a.2 (12)
B0207.12a.3 (12)
B0207.12b.1 (12)
B0207.12a.1 (12)
B0207.12c.1 (12)
InteractorWBInteraction000500425
WBInteraction000557980
WBInteraction000557982
GeneticsInterpolated_map_positionI0.512537
DescriptionPhenotypeWBPhenotype:0001444Paper_evidenceWBPaper00032335
Curator_confirmedWBPerson712
RemarkAnimals exhibited defective gustatory plasticity of NaCl.Paper_evidenceWBPaper00032335
Curator_confirmedWBPerson712
Affected_byMoleculeWBMol:00003571Paper_evidenceWBPaper00032335
Curator_confirmedWBPerson712
Phenotype_assayTreatmentAnimals were tested for response to 25 mM NaCl after various pre-treatments: a 15-min wash in CTX buffer with or without 100 mM NaCl (liquid), or 30 min on a CTX plate with or without 100 mM NaCl, and in the presence or absence of bacteria, 500 mM glycerol, or 3 uL of benzaldehyde.Paper_evidenceWBPaper00032335
Curator_confirmedWBPerson712
WBPhenotype:0001453Paper_evidenceWBPaper00032335
Curator_confirmedWBPerson712
RemarkAnimals showed stronger avoidance of 1 M NaCl compared to wild type.Paper_evidenceWBPaper00032335
Curator_confirmedWBPerson712
Affected_byMoleculeWBMol:00003571Paper_evidenceWBPaper00032335
Curator_confirmedWBPerson712
WBPhenotype:0001462Paper_evidenceWBPaper00032335
Curator_confirmedWBPerson712
RemarkAnimals showed defects in chemotaxis to NaCl compared to wild type.Paper_evidenceWBPaper00032335
Curator_confirmedWBPerson712
Affected_byMoleculeWBMol:00003571Paper_evidenceWBPaper00032335
Curator_confirmedWBPerson712
Phenotype_assayTreatmentAnimals were tested for response to 25 mM NaCl.Paper_evidenceWBPaper00032335
Curator_confirmedWBPerson712
WBPhenotype:0001817Paper_evidenceWBPaper00032335
Curator_confirmedWBPerson712
RemarkAnimals exhibited significant reduced starvation-enhanced gustatory plasticity compared to wild type.Paper_evidenceWBPaper00032335
Curator_confirmedWBPerson712
WBPhenotype:0002053Paper_evidenceWBPaper00003954
Curator_confirmedWBPerson134
Remarksynthetic resistance with avr-15(ad1051)Paper_evidenceWBPaper00003954
Curator_confirmedWBPerson134
synthetic resistance with glc-1(pk54)Paper_evidenceWBPaper00003954
Curator_confirmedWBPerson134
Affected_byMoleculeWBMol:00002786Paper_evidenceWBPaper00003954
Curator_confirmedWBPerson134
Phenotype_assayGenotypeavr-15(ad1051)Paper_evidenceWBPaper00003954
Curator_confirmedWBPerson134
glc-1(pk54)Paper_evidenceWBPaper00003954
Curator_confirmedWBPerson134
ReferenceWBPaper00025420
WBPaper00032335
WBPaper00003954
WBPaper00010338
RemarkAllele incorrectly cited as ad1032Paper_evidenceWBPaper00027150
Variation flanks and nucleotide change automatically updated to be on the positive strand to fix mapping and gff dumping issues.
[200224 mh6] reverse complemented/swapped the change and flanks to move the variation onto the plus strandCurator_confirmedWBPerson4055
MethodSubstitution_allele