WormBase Tree Display for Gene: WBGene00302991
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| WBGene00302991 | SMap | S_parent | Sequence | C24G6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cox-16 | |||||||
| Sequence_name | C24G6.13 | ||||||||
| Molecular_name | C24G6.13a | ||||||||
| C24G6.13a.1 | |||||||||
| CE51852 | |||||||||
| C24G6.13b | |||||||||
| CE52696 | |||||||||
| C24G6.13a.2 | |||||||||
| C24G6.13b.1 | |||||||||
| Other_name | CELE_C24G6.13 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | cox-16 | ||||||||
| DB_info | Database | NDB | locus_tag | CELE_C24G6.13 | |||||
| Panther | gene | CAEEL|WormBase=WBGene00302991|UniProtKB=A0A3B1DVM8 | |||||||
| family | PTHR17130 | ||||||||
| NCBI | gene | 36804982 | |||||||
| RefSeq | protein | NM_001392514.1 | |||||||
| NM_001392513.1 | |||||||||
| SwissProt | UniProtAcc | A0A1N7SYS3 | |||||||
| TrEMBL | UniProtAcc | A0A3B1DVM8 | |||||||
| UniProt_GCRP | UniProtAcc | A0A1N7SYS3 | |||||||
| OMIM | gene | 618064 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 06 Mar 2018 14:44:22 | WBPerson4025 | Event | Split_from | WBGene00016062 | ||
| 2 | 11 Jan 2019 09:47:05 | WBPerson1983 | Name_change | CGC_name | cox-16 | ||||
| Split_from | WBGene00016062 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cox | ||||||||
| Allele (25) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00002609 | ||||||||
| 00002610 | |||||||||
| 00002611 | |||||||||
| 00002612 | |||||||||
| 00002613 | |||||||||
| 00002614 | |||||||||
| 00003282 | |||||||||
| 00302381 | |||||||||
| Contained_in_operon | CEOP5606 | ||||||||
| Ortholog (13) | |||||||||
| Structured_description | Automated_description | Involved in mitochondrial cytochrome c oxidase assembly. Predicted to be located in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Is an ortholog of human COX16 (cytochrome c oxidase assembly factor COX16). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070507 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20213) | ||||
| Molecular_info | Corresponding_CDS | C24G6.13a | |||||||
| C24G6.13b | |||||||||
| Corresponding_transcript | C24G6.13a.1 | ||||||||
| C24G6.13a.2 | |||||||||
| C24G6.13b.1 | |||||||||
| Other_sequence (36) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00041105 | Inferred_automatically | RNAi_primary | |||||
| Microarray_results | SMD_C24G6.8 | ||||||||
| Aff_C24G6.8 | |||||||||
| GPL8673_C24G6_8P00132 | |||||||||
| Expression_cluster | WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection | ||||||||
| WBPaper00065945:epidermis-rpoa-2(-)_upregulated_transcript | |||||||||
| WBPaper00026929:sir-2.1_overexpression_regulated | |||||||||
| WBPaper00026980:intestine_enriched | |||||||||
| [cgc5767]:expression_class_M | |||||||||
| [cgc5767]:expression_class_SM | |||||||||
| [cgc6390]:intrinsic | |||||||||
| Map_info | Map | V | Position | -1.68029 | |||||
| Positive | Positive_clone | C24G6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | cox-16 gene name added to the correct half of a former gene structure. Timing meant that the split and name assignment occurred within 2 weeks and the data was therefor not available to the curator making the split so they could not keep cox-16 with the domain confirming the orthology. | Curator_confirmed | WBPerson1983 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
