WormBase Tree Display for Gene: WBGene00302991
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WBGene00302991 | SMap | S_parent | Sequence | C24G6 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | cox-16 | |||||
Sequence_name | C24G6.13 | ||||||
Molecular_name | C24G6.13a | ||||||
C24G6.13a.1 | |||||||
CE51852 | |||||||
C24G6.13b | |||||||
CE52696 | |||||||
C24G6.13a.2 | |||||||
C24G6.13b.1 | |||||||
Other_name | CELE_C24G6.13 | Accession_evidence | NDB | BX284605 | |||
Public_name | cox-16 | ||||||
DB_info | Database | NDB | locus_tag | CELE_C24G6.13 | |||
Panther | gene | CAEEL|WormBase=WBGene00302991|UniProtKB=A0A3B1DVM8 | |||||
family | PTHR17130 | ||||||
NCBI | gene | 36804982 | |||||
RefSeq | protein | NM_001392514.1 | |||||
NM_001392513.1 | |||||||
SwissProt | UniProtAcc | A0A1N7SYS3 | |||||
TrEMBL | UniProtAcc | A0A3B1DVM8 | |||||
UniProt_GCRP | UniProtAcc | A0A1N7SYS3 | |||||
OMIM | gene | 618064 | |||||
Species | Caenorhabditis elegans | ||||||
History (2) | |||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | cox | ||||||
Allele (25) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00002609 | ||||||
00002610 | |||||||
00002611 | |||||||
00002612 | |||||||
00002613 | |||||||
00002614 | |||||||
00003282 | |||||||
00302381 | |||||||
Contained_in_operon | CEOP5606 | ||||||
Ortholog (13) | |||||||
Structured_description | Automated_description | Involved in mitochondrial cytochrome c oxidase assembly. Predicted to be located in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Is an ortholog of human COX16 (cytochrome c oxidase assembly factor COX16). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0070507 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20213) | ||
Molecular_info | Corresponding_CDS | C24G6.13a | |||||
C24G6.13b | |||||||
Corresponding_transcript | C24G6.13a.1 | ||||||
C24G6.13a.2 | |||||||
C24G6.13b.1 | |||||||
Other_sequence (36) | |||||||
Experimental_info | RNAi_result | WBRNAi00041105 | Inferred_automatically | RNAi_primary | |||
Microarray_results | SMD_C24G6.8 | ||||||
Aff_C24G6.8 | |||||||
GPL8673_C24G6_8P00132 | |||||||
Expression_cluster | WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection | ||||||
WBPaper00065945:epidermis-rpoa-2(-)_upregulated_transcript | |||||||
WBPaper00026929:sir-2.1_overexpression_regulated | |||||||
WBPaper00026980:intestine_enriched | |||||||
[cgc5767]:expression_class_M | |||||||
[cgc5767]:expression_class_SM | |||||||
[cgc6390]:intrinsic | |||||||
Map_info | Map | V | Position | -1.68029 | |||
Positive | Positive_clone | C24G6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Remark | cox-16 gene name added to the correct half of a former gene structure. Timing meant that the split and name assignment occurred within 2 weeks and the data was therefor not available to the curator making the split so they could not keep cox-16 with the domain confirming the orthology. | Curator_confirmed | WBPerson1983 | ||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |