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WormBase Tree Display for Gene: WBGene00146871

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Name Class

WBGene00146871SMapS_parentSequenceCbre_Contig62
IdentityVersion1
NameCGC_nameCbn-apm-3From_analysisInferred_from_orthology
Sequence_nameCBN08146
Molecular_nameCBN08146
CBN08146.1
CN10315
Other_nameCBN08146
Public_nameCbn-apm-3
SpeciesCaenorhabditis brenneri
HistoryVersion_change130 Oct 2008 10:39:28WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCbn-apm-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classapm
RNASeq_FPKMWBls:0000002 (11)
WBls:000000412.6245From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
25.249From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:000002414.4941From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
14.9386From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
16.2974From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
17.3568From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
19.8108From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
WBls:000003812.9935From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
14.2296From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
15.4658From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
WBls:00001015.09522From_analysisRNASeq.brenneri.total_over_all_stages.control_median
5.94504From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
GO_annotation00208766
00208767
00208768
OrthologWBGene00000164Caenorhabditis elegansFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00029947Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00060198Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00129793Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g11712Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g12174Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g10939Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g13377Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP31.g6149Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g54Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g19043Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g4241Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g11225Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00071.g3365Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-apm-3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold412.g1098Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00225.g7460Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_03174Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_022238Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01403Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g11435Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0013320Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00224588Brugia malayiFrom_analysisWormBase-Compara
chrX_pilon.g18356Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00240284Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00277444Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00257347Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00291140Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00147053Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00152832Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00154920Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00155623Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00158734Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00162205Caenorhabditis brenneriFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be part of clathrin adaptor complex. Is an ortholog of C. elegans apm-3. In C. elegans, apm-3 is involved in lipid storage and lysosome organization.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN08146
Corresponding_transcriptCBN08146.1
Other_sequence (63)
Experimental_infoMicroarray_resultsGPL14142_CBN08146_241-300_0.841_58_C
GPL14142_CBN08146_426-485_0.902_15_B
GPL14142_CBN08146_567-626_0.912_6_A
MethodGene