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WormBase Tree Display for Gene: WBGene00060198

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Name Class

WBGene00060198SMapS_parentSequenceCrem_Contig24
IdentityVersion3
NameCGC_nameCre-apm-3From_analysisInferred_from_orthology
Sequence_nameCRE17209
Molecular_nameCRE17209
CRE17209.1
RP34401
Other_namecr01.sctg17.wum.84
Public_nameCre-apm-3
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:27WBPerson1847EventCreated
229 Nov 2007 17:00:48WBPerson2970Name_changeCGC_nameCre-apm-3
303 Jul 2008 11:45:31WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE17209
Other_namecr01.sctg17.wum.84
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classapm
RNASeq_FPKMWBls:000000414.5192From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
14.5694From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
14.6196From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (53)
WBls:000002710.0843From_analysisRNASeq.remanei.WBls:0000027.control_median
10.4162From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
13.3542From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
1.90401From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
8.85673From_analysisRNASeq.remanei.WBls:0000027.control_mean
9.7525From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
WBls:000003810.8865From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
2.06568From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
7.08842From_analysisRNASeq.remanei.WBls:0000038.control_mean
8.31307From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
WBls:00000413.52975From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
3.85276From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
4.19094From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
4.3464From_analysisRNASeq.remanei.WBls:0000041.control_mean
4.43318From_analysisRNASeq.remanei.WBls:0000041.control_median
4.67542From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
4.72567From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
5.10383From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
WBls:0000063 (12)
WBls:00001014.35393From_analysisRNASeq.remanei.total_over_all_stages.control_median
5.54801From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00155666
00155667
00155668
Ortholog (28)
ParalogWBGene00051839Caenorhabditis remaneiFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00055921Caenorhabditis remaneiFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00060042Caenorhabditis remaneiFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00070363Caenorhabditis remaneiFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be part of clathrin adaptor complex. Is an ortholog of C. elegans apm-3. In C. elegans, apm-3 is involved in lipid storage and lysosome organization.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE17209
Corresponding_transcriptCRE17209.1
Other_sequence (62)
Experimental_infoExpr_patternExpr1117583
Microarray_resultsGPL14146_CRE17209_285-344_0.821_72_C
GPL14146_CRE17209_460-519_0.899_27_B
GPL14146_CRE17209_586-645_0.906_23_A
MethodGene