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WormBase Tree Display for Gene: WBGene00143109

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Name Class

WBGene00143109SMapS_parentSequenceCbre_Contig13
IdentityVersion2
NameCGC_nameCbn-sly-1From_analysisInferred_from_orthology
Sequence_nameCBN04384
Molecular_nameCBN04384
CBN04384.1
CN22713
Public_nameCbn-sly-1
SpeciesCaenorhabditis brenneri
HistoryVersion_change101 Oct 2008 13:29:50WBPerson4055EventImportedfrom NGASP
207 Jun 2016 16:56:40WBPerson2970Name_changeCGC_nameCbn-sly-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsly
RNASeq_FPKMWBls:0000002 (11)
WBls:000000414.9163From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
29.8326From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:000002410.5673From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
11.4291From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
14.8082From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
7.8181From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
7.94161From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:000003825.5357From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
27.146From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
28.7563From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (17)
WBls:000010118.6466From_analysisRNASeq.brenneri.total_over_all_stages.control_median
18.7308From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
GO_annotation00205690
OrthologWBGene00009654Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00037807Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00055773Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00099848Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00127953Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g4075Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2959Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g4856Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g9435Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15297Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g14168Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2621Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g13595Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g26982Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g4328Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g437Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00387.g10135Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_11488.g23268Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_20200.g26413Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-F43D9.3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold628.g7336Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00128.g5097Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_11419Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010453Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04726Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g9546Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30124800Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00234091Brugia malayiFrom_analysisWormBase-Compara
chrIII_pilon.g8884Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00210715Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00214682Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00244384Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00262962Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00290028Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00141342Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00147637Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00147851Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00152678Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00155616Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00161372Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00193355Caenorhabditis brenneriFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in vesicle-mediated transport. Is an ortholog of C. elegans sly-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN04384
Corresponding_transcriptCBN04384.1
Other_sequence (66)
Experimental_infoMicroarray_resultsGPL14142_CBN04384_678-737_0.831_65_C
GPL14142_CBN04384_926-985_0.855_46_A
GPL14142_CBN04384_961-1020_0.873_34_B
MethodGene