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WormBase Tree Display for Gene: WBGene00143109

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Name Class

WBGene00143109SMapS_parentSequenceCbre_Contig13
IdentityVersion2
NameCGC_nameCbn-sly-1From_analysisInferred_from_orthology
Sequence_nameCBN04384
Molecular_nameCBN04384
CBN04384.1
CN22713
Public_nameCbn-sly-1
SpeciesCaenorhabditis brenneri
HistoryVersion_change101 Oct 2008 13:29:50WBPerson4055EventImportedfrom NGASP
207 Jun 2016 16:56:40WBPerson2970Name_changeCGC_nameCbn-sly-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsly
RNASeq_FPKMWBls:000000213.7169From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
14.4733From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
15.1439From_analysisRNASeq.brenneri.WBls:0000002.control_median
15.4765From_analysisRNASeq.brenneri.WBls:0000002.control_mean
15.8145From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
18.6466From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
22.5051From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
24.9566From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
35.1856From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
9.46638From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
WBls:000000414.9163From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
29.8326From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:000002410.5673From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
11.4291From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
14.8082From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
7.8181From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
7.94161From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:000003825.5357From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
27.146From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
28.7563From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:000004111.6456From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
13.2634From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
13.4928From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
15.4768From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
18.092From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
19.0156From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
19.1948From_analysisRNASeq.brenneri.WBls:0000041.control_median
19.374From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
21.3604From_analysisRNASeq.brenneri.WBls:0000041.control_mean
24.8626From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
26.4552From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
31.5971From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
32.3831From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
36.9978From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
39.3479From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
39.7626From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
WBls:000010118.6466From_analysisRNASeq.brenneri.total_over_all_stages.control_median
18.7308From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
GO_annotation00205690
OrthologWBGene00009654Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00037807Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00055773Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00099848Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00127953Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g4075Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2959Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g4856Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g9435Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15297Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g14168Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2621Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g13595Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g26982Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g4328Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g437Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00387.g10135Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_11488.g23268Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_20200.g26413Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-F43D9.3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold628.g7336Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00128.g5097Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_11419Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010453Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04726Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g9546Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30124800Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00234091Brugia malayiFrom_analysisWormBase-Compara
chrIII_pilon.g8884Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00210715Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00214682Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00244384Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00262962Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00290028Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00141342Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00147637Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00147851Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00152678Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00155616Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00161372Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00193355Caenorhabditis brenneriFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in vesicle-mediated transport. Is an ortholog of C. elegans sly-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN04384
Corresponding_transcriptCBN04384.1
Other_sequenceCBC17061_1
Tcir_isotig22142
FC555386.1
FG620988.1
Name_isotig05938
GR13878
BUC02348_1
XI03235
PSC03330_1
SRC00270_1
EX502228.1
FK805272.1
Acan_isotig20693
Acan_isotig06203
FC814900.1
AIC00115_1
XIC02701_1
AE03586
JI168761.1
MHC01476_1
HBC14144_1
EX559811.1
TM03201
GW408508.1
Acan_isotig06202
EY460275.1
FC809593.1
PPC12706_1
DN557323.1
ACC28995_1
HG09472
GW412906.1
TMC00504_1
MH01939
MH00467
MHC01688_1
EY461766.1
Oden_isotig14402
SR05266
ACC08611_1
EF066644.1
EX916605.1
JI459170.1
EH005523.1
FC814809.1
FC809517.1
ACC17522_1
Tcol_isotig17059
Dviv_isotig23207
TMC01927_1
EX555132.1
FK807278.1
PSC01877_1
SR00271
Hbac_isotig04617
PVC03320_1
AYC02360_1
SRC07666_1
TM00869
EL890337.1
HGC05265_1
TSC07412_1
Oden_isotig14403
GRC03139_1
LSC00552_1
SRC06860_1
Experimental_infoMicroarray_resultsGPL14142_CBN04384_678-737_0.831_65_C
GPL14142_CBN04384_926-985_0.855_46_A
GPL14142_CBN04384_961-1020_0.873_34_B
MethodGene