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WormBase Tree Display for Gene: WBGene00141342

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Name Class

WBGene00141342SMapS_parentSequenceCbre_Contig749
IdentityVersion2
NameCGC_nameCbn-vps-33.2From_analysisInferred_from_orthology
Sequence_nameCBN02617
Molecular_nameCBN02617
CBN02617.1
CN27856
Public_nameCbn-vps-33.2
SpeciesCaenorhabditis brenneri
HistoryVersion_change101 Oct 2008 13:29:50WBPerson4055EventImportedfrom NGASP
220 Mar 2018 10:26:12WBPerson4025Name_changeCGC_nameCbn-vps-33.2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvps
RNASeq_FPKMWBls:0000002 (11)
WBls:00000040.492274From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
0.984547From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
WBls:00000240.392742From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
0.529892From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
0.544365From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
0.609107From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
0.852272From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
WBls:00000380.95166From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
1.03306From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
1.11446From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (12)
WBls:00001010.984547From_analysisRNASeq.brenneri.total_over_all_stages.control_median
3.16895From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
GO_annotation00204245
OrthologWBGene00015130Caenorhabditis elegansFrom_analysisTreeFam
WBGene00016960Caenorhabditis elegansFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00027015Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00054122Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00069639Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00135975Caenorhabditis japonicaFrom_analysisTreeFam
CBOVI.g7842Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g8045Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g7612Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14312Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g17481Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g18187Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1554Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g19716Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g8696Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g8701Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g27532Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g8507Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00243.g7721Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-vps-33.2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp5_scaffold_00362.g10149Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_13721Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_006298Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01884Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g9170Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20275500Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00223230Brugia malayiFrom_analysisWormBase-Compara
chrII_pilon.g4811Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00240430Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00273338Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00259095Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00297701Trichuris murisFrom_analysisWormBase-Compara
WBGene00302063Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00152678Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00161372Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00193355Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00143109Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00147637Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00147851Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00155616Caenorhabditis brenneriFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in vesicle-mediated transport. Is an ortholog of C. elegans vps-33.2. In C. elegans, vps-33.2 is involved in spermatocyte division.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN02617
Corresponding_CDS_historyCBN02617:np197
Corresponding_transcriptCBN02617.1
Other_sequenceTcol_isotig02052
Experimental_infoMicroarray_resultsGPL14142_CBN02617_1656-1715_0.908_19_B
MethodGene