WormBase Tree Display for Gene: WBGene00016960
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| WBGene00016960 | SMap | S_parent | Sequence | C56C10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | vps-33.2 | Paper_evidence | WBPaper00031805 | |||||
| Person_evidence | WBPerson426 | ||||||||
| Sequence_name | C56C10.1 | ||||||||
| Molecular_name | C56C10.1 | ||||||||
| C56C10.1.1 | |||||||||
| CE30636 | |||||||||
| Other_name | CELE_C56C10.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | vps-33.2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 15 Mar 2007 17:00:31 | WBPerson2970 | Name_change | CGC_name | vps-33.2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vps | ||||||||
| Allele (31) | |||||||||
| In_cluster | conserved_miRNA_siRNA_cluster | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00006757 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00009654 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015130 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016643 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020298 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Involved in spermatocyte division. Predicted to be located in lysosome. Predicted to be part of CORVET complex. Expressed in intestine; pharynx; and spermatheca. Used to study ARC syndrome. Human ortholog(s) of this gene implicated in several diseases, including arthrogryposis multiplex congenita; arthrogryposis, renal dysfunction, and cholestasis 1; and progressive familial intrahepatic cholestasis. Is an ortholog of human VPS33B (VPS33B late endosome and lysosome associated). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:0050763 | Homo sapiens | Paper_evidence | WBPaper00032464 | ||||
| Curator_confirmed | WBPerson38202 | ||||||||
| Date_last_updated | 30 May 2018 00:00:00 | ||||||||
| Potential_model | DOID:557 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12712) | |||||
| DOID:0111353 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12712) | ||||||
| DOID:0070221 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12712) | ||||||
| DOID:13580 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12712) | ||||||
| DOID:0080954 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12712) | ||||||
| Models_disease_in_annotation | WBDOannot00000535 | ||||||||
| Molecular_info | Corresponding_CDS | C56C10.1 | |||||||
| Corresponding_transcript | C56C10.1.1 | ||||||||
| Other_sequence | Tcol_isotig02052 | ||||||||
| CR04921 | |||||||||
| Hbac_isotig05781 | |||||||||
| Dviv_isotig29676 | |||||||||
| Oden_isotig27960 | |||||||||
| CRC09241_1 | |||||||||
| Acan_isotig14752 | |||||||||
| Associated_feature | WBsf644309 | ||||||||
| WBsf657701 | |||||||||
| WBsf221470 | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr12007 | ||||||||
| Expr13085 | |||||||||
| Expr1012862 | |||||||||
| Expr1037275 | |||||||||
| Expr1147239 | |||||||||
| Expr2018024 | |||||||||
| Expr2036161 | |||||||||
| Drives_construct | WBCnstr00019957 | ||||||||
| WBCnstr00027677 | |||||||||
| WBCnstr00038575 | |||||||||
| Construct_product | WBCnstr00019957 | ||||||||
| WBCnstr00027677 | |||||||||
| WBCnstr00038575 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (118) | |||||||||
| Interaction (86) | |||||||||
| Map_info | Map | II | Position | -0.080891 | Error | 0.00486 | |||
| Positive | Positive_clone | C56C10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031805 | ||||||||
| WBPaper00032464 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00050040 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
