WormBase Tree Display for Gene: WBGene00020298
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| WBGene00020298 | SMap | S_parent | Sequence | T07A9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | uncp-18 | Person_evidence | WBPerson260 | |||||
| Sequence_name | T07A9.10 | ||||||||
| Molecular_name | T07A9.10 | ||||||||
| T07A9.10.1 | |||||||||
| CE17219 | |||||||||
| Other_name | CELE_T07A9.10 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | uncp-18 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 12 Jan 2023 20:48:33 | WBPerson51134 | Name_change | CGC_name | uncp-18 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | uncp | ||||||||
| Allele (37) | |||||||||
| Strain | WBStrain00055173 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00032392 | ||||||||
| 00032393 | |||||||||
| 00032394 | |||||||||
| 00032395 | |||||||||
| 00032396 | |||||||||
| 00032397 | |||||||||
| 00032398 | |||||||||
| 00032399 | |||||||||
| 00124966 | |||||||||
| Ortholog (27) | |||||||||
| Paralog | WBGene00006757 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00009654 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015130 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016643 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016960 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable syntaxin binding activity. Predicted to be involved in intracellular protein transport; neurotransmitter secretion; and vesicle docking involved in exocytosis. Predicted to be located in plasma membrane and secretory granule. Human ortholog(s) of this gene implicated in familial hemophagocytic lymphohistiocytosis 5. Is an ortholog of human STXBP2 (syntaxin binding protein 2) and STXBP3 (syntaxin binding protein 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110925 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11445) | ||||
| Molecular_info | Corresponding_CDS | T07A9.10 | |||||||
| Corresponding_transcript | T07A9.10.1 | ||||||||
| Other_sequence | CBC04611_1 | ||||||||
| Associated_feature | WBsf645754 | ||||||||
| WBsf659873 | |||||||||
| WBsf995138 | |||||||||
| WBsf227836 | |||||||||
| WBsf227837 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00052697 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00018328 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065636 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110892 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116196 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001397 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116214 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035283 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020499 | ||||||||
| Expr1038843 | |||||||||
| Expr1156307 | |||||||||
| Expr2005951 | |||||||||
| Expr2024168 | |||||||||
| Drives_construct | WBCnstr00025235 | ||||||||
| Construct_product | WBCnstr00025235 | ||||||||
| WBCnstr00043006 | |||||||||
| WBCnstr00043008 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (80) | |||||||||
| Interaction | WBInteraction000116025 | ||||||||
| WBInteraction000120613 | |||||||||
| WBInteraction000262297 | |||||||||
| WBInteraction000418215 | |||||||||
| WBInteraction000453498 | |||||||||
| WBInteraction000466919 | |||||||||
| WBInteraction000468400 | |||||||||
| WBInteraction000583834 | |||||||||
| WBInteraction000584270 | |||||||||
| Map_info | Map | IV | Position | -26.2101 | |||||
| Positive | Positive_clone | T07A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00066068 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
