WormBase Tree Display for Gene: WBGene00086561

WBGene00086561 SMap: S_parent: Sequence: K01A2
  Identity: Version: 1
    Name: Sequence_name: K01A2.12
      Molecular_name: K01A2.12
        K01A2.12.1
        CE19518
      Other_name: CELE_K01A2.12 Accession_evidence: NDB BX284602
      Public_name: K01A2.12
    DB_info: Database: WormFlux gene WBGene00086561
        NDB locus_tag CELE_K01A2.12
        NCBI gene 7040176
        RefSeq protein NM_001136346.1
        TREEFAM TREEFAM_ID TF319130
        TrEMBL UniProtAcc G5EFF3
        UniProt_GCRP UniProtAcc G5EFF3
    Species: Caenorhabditis elegans
    History: Version_change: 1 18 Jul 2008 16:14:13 WBPerson1867 Event: Created
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01499702
      WBVar02122083
      WBVar01500106
      WBVar02122349
      WBVar02121836
      WBVar02122426
    RNASeq_FPKM (74)
    Ortholog (13)
    Paralog: WBGene00019278
      WBGene00019279 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00019282 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00019283 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
    Structured_description: Automated_description: Enriched in DA neuron; GABAergic neurons; VA neuron; and muscle cell based on RNA-seq and microarray studies. Is affected by several genes including daf-16; dpy-10; and gld-1 based on RNA-seq and microarray studies. Is affected by ten chemicals including Cry5B; Oligosaccharides; and Quercetin based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K01A2.12
    Corresponding_transcript: K01A2.12.1
  Experimental_info: RNAi_result: WBRNAi00085206 Inferred_automatically: RNAi_primary
      WBRNAi00049592 Inferred_automatically: RNAi_primary
      WBRNAi00085213 Inferred_automatically: RNAi_primary
      WBRNAi00016375 Inferred_automatically: RNAi_primary
      WBRNAi00085212 Inferred_automatically: RNAi_primary
      WBRNAi00016374 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1026018
      Expr1153314
    Microarray_results: 172468_x_at
      172526_x_at
      172541_x_at
      194226_x_at
      194249_x_at
      Aff_K01A2.9
    Expression_cluster: WBPaper00044246:pgrn-1_ced-1_downregulated
      WBPaper00046121:mesoderm_unique
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:GABAergic-neuron_enriched
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00051352:Long-Term-Association-Memory_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056167:Cry5B_upregulated
      WBPaper00056167:ifo-1(kc2)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062590:Aging_downregulated_neuron
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00024671:AFD_AWB_vs_unsorted_downregulated
      WBPaper00025032:cluster_44
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00029437:dcr-1_upregulated
      WBPaper00029437:rde-4_upregulated
      WBPaper00030839:Larval_A_Class
      WBPaper00031003:0hr_muscle_enriched
      WBPaper00031003:hlh_1_enriched
      WBPaper00031003:total_muscle_enriched
      WBPaper00035227:heat_shock_regulated
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00035873:osm-8_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00037695:LD_3-day
      WBPaper00037901:GLD-1_mRNA_targets
      WBPaper00038462:aging_downregulated
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00040963:TA300_up
      WBPaper00041002:HF_3d_0.2mM_Up
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041002:HF_11d_0.2mM_Up
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00046639:tyrosol_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00050767:Octopamine_induced
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00057098:SiO2-nanoparticles_upregulated
  Map_info: Positive: Positive_clone: K01A2 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II -15.6275
  Method: Gene